Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm4760-201ENSMUST00000119663 1030 ntBASIC12.58□□□□□ -0.4
RaraP11416 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
RaraP11416 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
RaraP11416 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Mir8093-201ENSMUST00000185043 137 ntBASIC12.58□□□□□ -0.4
RaraP11416 Gm8856-201ENSMUST00000185254 1144 ntBASIC12.58□□□□□ -0.4
RaraP11416 Gm38341-201ENSMUST00000195357 515 ntBASIC12.58□□□□□ -0.4
RaraP11416 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Gm2553-201ENSMUST00000215986 605 ntBASIC12.58□□□□□ -0.4
RaraP11416 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
RaraP11416 Gm1840-201ENSMUST00000051687 1432 ntBASIC12.58□□□□□ -0.4
RaraP11416 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.58□□□□□ -0.4
RaraP11416 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
RaraP11416 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
RaraP11416 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
RaraP11416 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
RaraP11416 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
RaraP11416 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Vmn1r207-ps-201ENSMUST00000119931 1073 ntBASIC12.57□□□□□ -0.4
RaraP11416 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC12.57□□□□□ -0.4
RaraP11416 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC12.57□□□□□ -0.4
RaraP11416 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Gm38117-201ENSMUST00000194653 939 ntBASIC12.57□□□□□ -0.4
RaraP11416 Gm38266-201ENSMUST00000194931 421 ntBASIC12.57□□□□□ -0.4
RaraP11416 Gm38317-201ENSMUST00000195564 343 ntBASIC12.57□□□□□ -0.4
RaraP11416 Gm37083-201ENSMUST00000195784 711 ntTSL 2 BASIC12.57□□□□□ -0.4
RaraP11416 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC12.57□□□□□ -0.4
RaraP11416 Gm43758-201ENSMUST00000199500 367 ntBASIC12.57□□□□□ -0.4
RaraP11416 Gm43275-201ENSMUST00000202053 1020 ntBASIC12.57□□□□□ -0.4
RaraP11416 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.57□□□□□ -0.4
RaraP11416 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
RaraP11416 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC12.57□□□□□ -0.4
RaraP11416 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RaraP11416 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
RaraP11416 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Gm35850-202ENSMUST00000211705 2120 ntBASIC12.56□□□□□ -0.4
RaraP11416 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Gm37122-201ENSMUST00000195313 1567 ntBASIC12.56□□□□□ -0.4
RaraP11416 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.56□□□□□ -0.4
RaraP11416 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RaraP11416 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 70.7 ms