Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Snrnp40Q6PE01 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
Snrnp40Q6PE01 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
Snrnp40Q6PE01 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
Snrnp40Q6PE01 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Gm18798-201ENSMUST00000187264 1700 ntBASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC10.27□□□□□ -0.76
Snrnp40Q6PE01 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm12036-201ENSMUST00000120008 530 ntBASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm16219-201ENSMUST00000120096 274 ntBASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm25492-201ENSMUST00000157383 129 ntBASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm4895-201ENSMUST00000181646 1137 ntBASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm19015-201ENSMUST00000184002 1189 ntBASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm10728-201ENSMUST00000194292 1829 ntBASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm9415-201ENSMUST00000200462 1321 ntBASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
Snrnp40Q6PE01 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm4294-201ENSMUST00000105169 614 ntBASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm13019-201ENSMUST00000120000 276 ntBASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm12453-201ENSMUST00000121981 331 ntBASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm25830-201ENSMUST00000158923 132 ntBASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm17070-201ENSMUST00000170463 784 ntBASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm17709-201ENSMUST00000174536 1096 ntBASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm8197-202ENSMUST00000193422 934 ntBASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 AC153962.2-201ENSMUST00000219417 550 ntBASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Snrnp40Q6PE01 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms