Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
RaraP11416 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Etfrf1-201ENSMUST00000039729 2436 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Gm6157-201ENSMUST00000199935 1897 ntBASIC12.6□□□□□ -0.39
RaraP11416 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 4933405E24Rik-201ENSMUST00000131019 1078 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC12.6□□□□□ -0.39
RaraP11416 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Gm25700-201ENSMUST00000177693 110 ntBASIC12.6□□□□□ -0.39
RaraP11416 Gm4310-201ENSMUST00000177847 889 ntBASIC12.6□□□□□ -0.39
RaraP11416 2010110E17Rik-201ENSMUST00000184161 879 ntBASIC12.6□□□□□ -0.39
RaraP11416 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC12.6□□□□□ -0.39
RaraP11416 Gm5982-201ENSMUST00000196234 512 ntBASIC12.6□□□□□ -0.39
RaraP11416 Gm43630-201ENSMUST00000201550 776 ntBASIC12.6□□□□□ -0.39
RaraP11416 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC12.6□□□□□ -0.39
RaraP11416 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.6□□□□□ -0.39
RaraP11416 Gm9797-202ENSMUST00000218003 294 ntBASIC12.6□□□□□ -0.39
RaraP11416 CT009764.1-201ENSMUST00000222260 483 ntBASIC12.6□□□□□ -0.39
RaraP11416 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.6□□□□□ -0.39
RaraP11416 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
RaraP11416 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC12.6□□□□□ -0.39
RaraP11416 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Gm6015-201ENSMUST00000217493 1586 ntBASIC12.6□□□□□ -0.39
RaraP11416 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
RaraP11416 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RaraP11416 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC12.59□□□□□ -0.39
RaraP11416 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Gm22133-201ENSMUST00000102082 109 ntBASIC12.59□□□□□ -0.39
RaraP11416 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Gm13296-201ENSMUST00000117854 997 ntBASIC12.59□□□□□ -0.39
RaraP11416 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC12.59□□□□□ -0.39
RaraP11416 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC12.59□□□□□ -0.39
RaraP11416 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12.59□□□□□ -0.39
RaraP11416 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
RaraP11416 Ighv5-7-201ENSMUST00000192302 244 ntBASIC12.59□□□□□ -0.39
RaraP11416 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.59□□□□□ -0.39
RaraP11416 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC12.59□□□□□ -0.39
RaraP11416 Gm18065-201ENSMUST00000221395 526 ntBASIC12.59□□□□□ -0.39
RaraP11416 AC123665.1-201ENSMUST00000228204 438 ntBASIC12.59□□□□□ -0.39
RaraP11416 AC125117.2-201ENSMUST00000228344 1140 ntBASIC12.59□□□□□ -0.39
RaraP11416 Gm17383-201ENSMUST00000078739 1041 ntBASIC12.59□□□□□ -0.39
RaraP11416 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC12.59□□□□□ -0.39
RaraP11416 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC12.59□□□□□ -0.39
RaraP11416 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.59□□□□□ -0.39
RaraP11416 AC211878.3-201ENSMUST00000222629 2018 ntBASIC12.59□□□□□ -0.39
RaraP11416 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Gm43908-201ENSMUST00000205074 1472 ntBASIC12.59□□□□□ -0.39
RaraP11416 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RaraP11416 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RaraP11416 Gm43127-201ENSMUST00000195890 2789 ntBASIC12.58□□□□□ -0.39
RaraP11416 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
RaraP11416 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
RaraP11416 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RaraP11416 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Gm42853-201ENSMUST00000201273 1387 ntBASIC12.58□□□□□ -0.4
RaraP11416 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
RaraP11416 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RaraP11416 Gm11509-201ENSMUST00000117358 325 ntBASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 82.5 ms