Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Ubfd1Q78JW9 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ubfd1Q78JW9 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.44□□□□□ -0.58
Ubfd1Q78JW9 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm14665-201ENSMUST00000122294 557 ntBASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm23771-201ENSMUST00000178702 110 ntBASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm9645-201ENSMUST00000197131 792 ntBASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm8285-201ENSMUST00000208293 759 ntBASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm44551-201ENSMUST00000208804 171 ntBASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 CT485606.1-201ENSMUST00000213187 878 ntBASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 AC093022.4-203ENSMUST00000228523 2657 ntBASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC11.43□□□□□ -0.58
Ubfd1Q78JW9 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm11700-201ENSMUST00000119409 403 ntBASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm11960-201ENSMUST00000122068 925 ntBASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm18367-201ENSMUST00000176139 600 ntBASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm44980-201ENSMUST00000205826 314 ntBASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm44545-201ENSMUST00000208262 746 ntBASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 D9Wsu149-201ENSMUST00000214169 594 ntBASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm9826-201ENSMUST00000029124 1299 ntBASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Ubfd1Q78JW9 Gm6430-201ENSMUST00000054664 1248 ntBASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms