Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Gm12712-201ENSMUST00000120676 801 ntBASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Mir6941-201ENSMUST00000184711 59 ntBASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Gm37284-201ENSMUST00000193607 539 ntBASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 AC134248.1-201ENSMUST00000216113 1176 ntBASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Gm8181-201ENSMUST00000062242 669 ntBASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ddx55Q6ZPL9 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Gm44758-201ENSMUST00000206096 2068 ntBASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Gm14497-201ENSMUST00000119537 580 ntBASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Gm9507-202ENSMUST00000180157 654 ntBASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Gm42430-201ENSMUST00000197209 616 ntBASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Gm44216-201ENSMUST00000203942 157 ntBASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Gm40879-201ENSMUST00000220759 612 ntBASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 AC154305.2-201ENSMUST00000225813 901 ntBASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx55Q6ZPL9 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Gm15197-201ENSMUST00000120526 478 ntBASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Gm29763-201ENSMUST00000205306 616 ntBASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Gm5599-201ENSMUST00000209602 788 ntBASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Gm7525-201ENSMUST00000219425 454 ntBASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Gm26670-202ENSMUST00000226862 340 ntBASIC13.28□□□□□ -0.28
Ddx55Q6ZPL9 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms