Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Gm23085-201ENSMUST00000157849 293 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Gm16296-201ENSMUST00000159905 325 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 Gm5621-201ENSMUST00000187303 640 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Gm17831-201ENSMUST00000205579 900 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Gm19640-201ENSMUST00000214849 464 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Sox3P53784 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Sox3P53784 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 Gm14132-201ENSMUST00000117188 1719 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Gm5855-201ENSMUST00000200240 1305 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sox3P53784 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Sox3P53784 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Sox3P53784 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sox3P53784 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sox3P53784 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC11.27□□□□□ -0.6
Sox3P53784 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Sox3P53784 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sox3P53784 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Sox3P53784 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Sox3P53784 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Gm23596-201ENSMUST00000104304 132 ntBASIC11.27□□□□□ -0.61
Sox3P53784 Gm24891-201ENSMUST00000104391 136 ntBASIC11.27□□□□□ -0.61
Sox3P53784 Gm4879-201ENSMUST00000122190 1272 ntBASIC11.27□□□□□ -0.61
Sox3P53784 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC11.27□□□□□ -0.61
Sox3P53784 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Gm6397-201ENSMUST00000161973 1069 ntBASIC11.27□□□□□ -0.61
Sox3P53784 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC11.27□□□□□ -0.61
Sox3P53784 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC11.27□□□□□ -0.61
Sox3P53784 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC11.27□□□□□ -0.61
Sox3P53784 Gm7551-201ENSMUST00000089593 1074 ntBASIC11.27□□□□□ -0.61
Sox3P53784 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Gm37542-201ENSMUST00000192563 2832 ntBASIC11.27□□□□□ -0.61
Sox3P53784 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Sox3P53784 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Sox3P53784 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC11.27□□□□□ -0.61
Sox3P53784 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Sox3P53784 Gm9129-201ENSMUST00000218173 1689 ntBASIC11.27□□□□□ -0.61
Sox3P53784 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Sox3P53784 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Sox3P53784 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Sox3P53784 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 AC126257.2-201ENSMUST00000215507 2300 ntBASIC11.26□□□□□ -0.61
Sox3P53784 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Sox3P53784 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC11.26□□□□□ -0.61
Sox3P53784 Gm11980-201ENSMUST00000121445 986 ntBASIC11.26□□□□□ -0.61
Sox3P53784 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC11.26□□□□□ -0.61
Sox3P53784 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC11.26□□□□□ -0.61
Sox3P53784 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC11.26□□□□□ -0.61
Sox3P53784 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
Sox3P53784 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC11.26□□□□□ -0.61
Sox3P53784 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC11.26□□□□□ -0.61
Sox3P53784 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC11.26□□□□□ -0.61
Sox3P53784 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Mir6923-201ENSMUST00000184592 72 ntBASIC11.26□□□□□ -0.61
Sox3P53784 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC11.26□□□□□ -0.61
Sox3P53784 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Sox3P53784 Ighv1-60-201ENSMUST00000195816 405 ntBASIC11.26□□□□□ -0.61
Sox3P53784 Gm43692-201ENSMUST00000198236 1062 ntBASIC11.26□□□□□ -0.61
Sox3P53784 Gm42779-201ENSMUST00000198807 406 ntBASIC11.26□□□□□ -0.61
Sox3P53784 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC11.26□□□□□ -0.61
Sox3P53784 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC11.26□□□□□ -0.61
Sox3P53784 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms