Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC15.14■□□□□ 0.01
Col18a1P39061 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Tsc22d3-201ENSMUST00000055738 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col18a1P39061 Gm14699-201ENSMUST00000122340 228 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 1700037C06Rik-201ENSMUST00000132824 874 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Gm27833-201ENSMUST00000184285 124 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Gm29595-202ENSMUST00000187954 466 ntTSL 3 BASIC15.13■□□□□ 0.01
Col18a1P39061 Rarres2-203ENSMUST00000204182 672 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Col18a1P39061 Gm44236-201ENSMUST00000204492 513 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 AC154806.7-201ENSMUST00000227998 202 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Col18a1P39061 Gm5424-201ENSMUST00000053865 1240 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Mcu-201ENSMUST00000009791 1079 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Col18a1P39061 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC15.13■□□□□ 0.01
Col18a1P39061 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Col18a1P39061 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Acot6-202ENSMUST00000222921 3622 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 AC090962.2-201ENSMUST00000225064 1801 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Shroom3-211ENSMUST00000225438 5742 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Gal3st2b-201ENSMUST00000177958 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Gm17733-201ENSMUST00000181883 1048 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Col18a1P39061 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC15.13■□□□□ 0.01
Col18a1P39061 Cryab-205ENSMUST00000216755 836 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Vps25-201ENSMUST00000007533 615 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Krtap6-3-201ENSMUST00000079151 444 ntBASIC15.13■□□□□ 0.01
Col18a1P39061 Krtap3-2-201ENSMUST00000092699 1031 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Col18a1P39061 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col18a1P39061 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Col18a1P39061 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm37582-201ENSMUST00000192953 1409 ntBASIC15.12■□□□□ 0.01
Col18a1P39061 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm6939-201ENSMUST00000122029 864 ntBASIC15.12■□□□□ 0.01
Col18a1P39061 Gm15489-201ENSMUST00000132811 973 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm6038-201ENSMUST00000154310 948 ntBASIC15.12■□□□□ 0.01
Col18a1P39061 Gm29328-212ENSMUST00000209182 1168 ntTSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 AC166902.2-202ENSMUST00000213191 1038 ntTSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 CAAA01125382.3-201ENSMUST00000215277 643 ntBASIC15.12■□□□□ 0.01
Col18a1P39061 Gm3137-201ENSMUST00000218177 620 ntTSL 3 BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm6859-201ENSMUST00000218614 989 ntBASIC15.12■□□□□ 0.01
Col18a1P39061 Tnfrsf14-205ENSMUST00000219534 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm34667-201ENSMUST00000222974 1258 ntTSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 Ankrd45-201ENSMUST00000052245 849 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm9531-201ENSMUST00000055820 638 ntTSL 3 BASIC15.12■□□□□ 0.01
Col18a1P39061 Tnnt1-201ENSMUST00000071798 1027 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm45779-201ENSMUST00000212189 4064 ntBASIC15.12■□□□□ 0.01
Col18a1P39061 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC15.12■□□□□ 0.01
Col18a1P39061 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Col18a1P39061 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col18a1P39061 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Ighv14-3-201ENSMUST00000103469 399 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col18a1P39061 Ighv1-56-201ENSMUST00000103527 294 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col18a1P39061 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Col18a1P39061 Tnnt3-203ENSMUST00000105941 747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Tnnt3-204ENSMUST00000105942 720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Tnnt3-205ENSMUST00000105943 720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Tnnt3-207ENSMUST00000105945 747 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Tnnt3-208ENSMUST00000105946 765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Rpl10a-ps1-201ENSMUST00000120360 654 ntBASIC15.11■□□□□ 0.01
Col18a1P39061 Gm14829-201ENSMUST00000121499 1138 ntBASIC15.11■□□□□ 0.01
Col18a1P39061 Gm38145-201ENSMUST00000192319 693 ntBASIC15.11■□□□□ 0.01
Col18a1P39061 Gm37009-201ENSMUST00000193297 361 ntBASIC15.11■□□□□ 0.01
Col18a1P39061 A830092H15Rik-202ENSMUST00000195446 649 ntTSL 3 BASIC15.11■□□□□ 0.01
Col18a1P39061 Tcl1b1-202ENSMUST00000222342 664 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Col18a1P39061 Rps18-201ENSMUST00000008812 600 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col18a1P39061 Mtch2-202ENSMUST00000111467 2281 ntTSL 5 BASIC15.11■□□□□ 0.01
Col18a1P39061 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms