Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
Cdx1P18111 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Cdx1P18111 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Cdx1P18111 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Cdx1P18111 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Cdx1P18111 Gm12799-201ENSMUST00000118151 2560 ntBASIC9.51□□□□□ -0.89
Cdx1P18111 Gpatch2-204ENSMUST00000110943 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Cdx1P18111 Fmod-201ENSMUST00000048183 3120 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Cdx1P18111 Tenm2-208ENSMUST00000163524 8668 ntAPPRIS P2 TSL 5 BASIC9.5□□□□□ -0.89
Cdx1P18111 Gm38049-201ENSMUST00000195698 1372 ntBASIC9.5□□□□□ -0.89
Cdx1P18111 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC9.5□□□□□ -0.89
Cdx1P18111 Mtss1l-205ENSMUST00000144041 3225 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 P2ry1-202ENSMUST00000193201 3614 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC9.5□□□□□ -0.89
Cdx1P18111 Sfxn5-201ENSMUST00000045846 3656 ntAPPRIS P2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 AC096628.2-201ENSMUST00000225443 1413 ntBASIC9.5□□□□□ -0.89
Cdx1P18111 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
Cdx1P18111 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC9.5□□□□□ -0.89
Cdx1P18111 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Gm5703-201ENSMUST00000186658 3973 ntBASIC9.5□□□□□ -0.89
Cdx1P18111 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
Cdx1P18111 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC9.5□□□□□ -0.89
Cdx1P18111 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC9.5□□□□□ -0.89
Cdx1P18111 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC9.5□□□□□ -0.89
Cdx1P18111 Gm5637-201ENSMUST00000153890 1119 ntBASIC9.5□□□□□ -0.89
Cdx1P18111 Gm38241-201ENSMUST00000192641 898 ntBASIC9.5□□□□□ -0.89
Cdx1P18111 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC9.5□□□□□ -0.89
Cdx1P18111 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC9.5□□□□□ -0.89
Cdx1P18111 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC9.5□□□□□ -0.89
Cdx1P18111 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC9.5□□□□□ -0.89
Cdx1P18111 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC9.5□□□□□ -0.89
Cdx1P18111 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
Cdx1P18111 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC9.5□□□□□ -0.89
Cdx1P18111 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Tbpl1-202ENSMUST00000127698 2873 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
Cdx1P18111 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
Cdx1P18111 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Ptpre-208ENSMUST00000211788 2331 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Gm6203-201ENSMUST00000209575 1342 ntBASIC9.5□□□□□ -0.89
Cdx1P18111 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Adra2b-202ENSMUST00000104934 4014 ntAPPRIS ALT2 BASIC9.5□□□□□ -0.89
Cdx1P18111 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC9.5□□□□□ -0.89
Cdx1P18111 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Cdx1P18111 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
Cdx1P18111 Aco2-201ENSMUST00000023116 2918 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
Cdx1P18111 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC9.49□□□□□ -0.89
Cdx1P18111 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC9.49□□□□□ -0.89
Cdx1P18111 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC9.49□□□□□ -0.89
Cdx1P18111 Tmprss7-201ENSMUST00000114562 2587 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm13126-201ENSMUST00000117079 3063 ntBASIC9.49□□□□□ -0.89
Cdx1P18111 Gpr68-201ENSMUST00000053668 3099 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
Cdx1P18111 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC9.49□□□□□ -0.89
Cdx1P18111 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC9.49□□□□□ -0.89
Cdx1P18111 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC9.49□□□□□ -0.89
Cdx1P18111 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC9.49□□□□□ -0.89
Cdx1P18111 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm5850-201ENSMUST00000192923 1206 ntBASIC9.49□□□□□ -0.89
Cdx1P18111 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC9.49□□□□□ -0.89
Cdx1P18111 Gm45865-201ENSMUST00000211815 945 ntBASIC9.49□□□□□ -0.89
Cdx1P18111 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Cts7-204ENSMUST00000225321 1257 ntBASIC9.49□□□□□ -0.89
Cdx1P18111 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC9.49□□□□□ -0.89
Cdx1P18111 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
Cdx1P18111 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms