Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm9550-201ENSMUST00000161130 862 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm18734-201ENSMUST00000172937 808 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm3508-201ENSMUST00000186012 792 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm37666-201ENSMUST00000194110 866 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm10109-202ENSMUST00000206890 1211 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm45118-201ENSMUST00000208928 825 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Dhrs4-202ENSMUST00000226168 828 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm38055-201ENSMUST00000195353 2217 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 BC043934-202ENSMUST00000185694 2356 ntBASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Smc1aQ9CU62 Rnf165-202ENSMUST00000182024 4309 ntTSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm45677-201ENSMUST00000209975 1341 ntBASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm9062-201ENSMUST00000117712 727 ntBASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm12314-201ENSMUST00000118104 538 ntBASIC13.17□□□□□ -0.3
Smc1aQ9CU62 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 AU022133-201ENSMUST00000200601 873 ntBASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm18393-201ENSMUST00000208349 1131 ntBASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm7848-201ENSMUST00000210739 718 ntBASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm10702-201ENSMUST00000098929 1268 ntBASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Gm37580-201ENSMUST00000192408 2800 ntBASIC13.17□□□□□ -0.3
Smc1aQ9CU62 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smc1aQ9CU62 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smc1aQ9CU62 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smc1aQ9CU62 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smc1aQ9CU62 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smc1aQ9CU62 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 69.8 ms