Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Limch1Q3UH68 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Limch1Q3UH68 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Limch1Q3UH68 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Limch1Q3UH68 CT025678.1-201ENSMUST00000214795 2972 ntBASIC13.83□□□□□ -0.2
Limch1Q3UH68 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Limch1Q3UH68 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Limch1Q3UH68 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Limch1Q3UH68 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Limch1Q3UH68 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Limch1Q3UH68 Gm3836-201ENSMUST00000211377 1613 ntBASIC13.82□□□□□ -0.2
Limch1Q3UH68 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Gm19087-201ENSMUST00000191430 946 ntBASIC13.82□□□□□ -0.2
Limch1Q3UH68 Gm5051-201ENSMUST00000204085 485 ntBASIC13.82□□□□□ -0.2
Limch1Q3UH68 AC159819.2-201ENSMUST00000216151 342 ntBASIC13.82□□□□□ -0.2
Limch1Q3UH68 AC154276.3-201ENSMUST00000227643 998 ntBASIC13.82□□□□□ -0.2
Limch1Q3UH68 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Ntng1-201ENSMUST00000051253 327 ntBASIC13.82□□□□□ -0.2
Limch1Q3UH68 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC13.82□□□□□ -0.2
Limch1Q3UH68 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.82□□□□□ -0.2
Limch1Q3UH68 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Limch1Q3UH68 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Gm43242-201ENSMUST00000199507 1776 ntBASIC13.81□□□□□ -0.2
Limch1Q3UH68 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC13.81□□□□□ -0.2
Limch1Q3UH68 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Gm15515-201ENSMUST00000117827 822 ntBASIC13.81□□□□□ -0.2
Limch1Q3UH68 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Gm8956-201ENSMUST00000203939 825 ntBASIC13.81□□□□□ -0.2
Limch1Q3UH68 Gm5369-201ENSMUST00000217499 588 ntBASIC13.81□□□□□ -0.2
Limch1Q3UH68 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Gm43984-201ENSMUST00000204572 2864 ntBASIC13.81□□□□□ -0.2
Limch1Q3UH68 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Limch1Q3UH68 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.8□□□□□ -0.2
Limch1Q3UH68 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Gm18986-201ENSMUST00000216029 1986 ntBASIC13.8□□□□□ -0.2
Limch1Q3UH68 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Gm13045-201ENSMUST00000119019 712 ntBASIC13.8□□□□□ -0.2
Limch1Q3UH68 Gm11700-201ENSMUST00000119409 403 ntBASIC13.8□□□□□ -0.2
Limch1Q3UH68 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Gm19353-201ENSMUST00000184561 445 ntBASIC13.8□□□□□ -0.2
Limch1Q3UH68 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 AC159308.2-201ENSMUST00000213592 2325 ntBASIC13.8□□□□□ -0.2
Limch1Q3UH68 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Limch1Q3UH68 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms