Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 AC173482.6-201ENSMUST00000225889 1741 ntBASIC13□□□□□ -0.33
Col6a1Q04857 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Gm44056-201ENSMUST00000204623 1427 ntBASIC13□□□□□ -0.33
Col6a1Q04857 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
Col6a1Q04857 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Gm25766-201ENSMUST00000104101 131 ntBASIC13□□□□□ -0.33
Col6a1Q04857 Gm12030-201ENSMUST00000121917 223 ntBASIC13□□□□□ -0.33
Col6a1Q04857 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC13□□□□□ -0.33
Col6a1Q04857 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC13□□□□□ -0.33
Col6a1Q04857 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Gm18201-201ENSMUST00000174735 875 ntBASIC13□□□□□ -0.33
Col6a1Q04857 Gm9135-201ENSMUST00000182963 990 ntBASIC13□□□□□ -0.33
Col6a1Q04857 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13□□□□□ -0.33
Col6a1Q04857 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Gm3017-201ENSMUST00000203603 1126 ntBASIC13□□□□□ -0.33
Col6a1Q04857 Gm34655-202ENSMUST00000215259 877 ntTSL 3 BASIC13□□□□□ -0.33
Col6a1Q04857 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Col6a1Q04857 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC13□□□□□ -0.33
Col6a1Q04857 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
Col6a1Q04857 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Col6a1Q04857 Gm19680-201ENSMUST00000095050 1513 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Col6a1Q04857 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Gm5434-202ENSMUST00000222384 1451 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Gm5434-201ENSMUST00000071825 1451 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC12.99□□□□□ -0.33
Col6a1Q04857 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Col6a1Q04857 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Col6a1Q04857 Gm15207-201ENSMUST00000119259 442 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 n-R5s84-201ENSMUST00000122591 109 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC12.99□□□□□ -0.33
Col6a1Q04857 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col6a1Q04857 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC12.99□□□□□ -0.33
Col6a1Q04857 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Gm43858-201ENSMUST00000199418 1778 ntBASIC12.99□□□□□ -0.33
Col6a1Q04857 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col6a1Q04857 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.98□□□□□ -0.33
Col6a1Q04857 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC12.98□□□□□ -0.33
Col6a1Q04857 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Gm4310-201ENSMUST00000177847 889 ntBASIC12.98□□□□□ -0.33
Col6a1Q04857 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.98□□□□□ -0.33
Col6a1Q04857 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 A430010J10Rik-201ENSMUST00000054470 408 ntBASIC12.98□□□□□ -0.33
Col6a1Q04857 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.98□□□□□ -0.33
Col6a1Q04857 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.98□□□□□ -0.33
Col6a1Q04857 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col6a1Q04857 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 91.8 ms