Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usp4P35123 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Usp4P35123 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usp4P35123 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Usp4P35123 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usp4P35123 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC12.32□□□□□ -0.44
Usp4P35123 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usp4P35123 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Usp4P35123 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usp4P35123 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usp4P35123 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usp4P35123 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Gm14999-201ENSMUST00000121039 624 ntBASIC12.31□□□□□ -0.44
Usp4P35123 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC12.31□□□□□ -0.44
Usp4P35123 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Gm15276-201ENSMUST00000145953 498 ntBASIC12.31□□□□□ -0.44
Usp4P35123 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
Usp4P35123 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.31□□□□□ -0.44
Usp4P35123 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Gm13097-201ENSMUST00000210722 397 ntBASIC12.31□□□□□ -0.44
Usp4P35123 Gm10254-201ENSMUST00000052888 867 ntBASIC12.31□□□□□ -0.44
Usp4P35123 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usp4P35123 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Usp4P35123 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Usp4P35123 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Gm19221-201ENSMUST00000221827 1477 ntBASIC12.3□□□□□ -0.44
Usp4P35123 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.3□□□□□ -0.44
Usp4P35123 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.3□□□□□ -0.44
Usp4P35123 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
Usp4P35123 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
Usp4P35123 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Usp4P35123 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms