Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
Vti1aO89116 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Vti1aO89116 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 AC154671.1-201ENSMUST00000228617 1578 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Vti1aO89116 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Vti1aO89116 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC12.7□□□□□ -0.38
Vti1aO89116 Gm22144-201ENSMUST00000157402 102 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC12.7□□□□□ -0.38
Vti1aO89116 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC12.7□□□□□ -0.38
Vti1aO89116 Gm9540-201ENSMUST00000188230 478 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Gm43058-201ENSMUST00000197645 625 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 Gm45575-201ENSMUST00000210283 548 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 CT485607.1-201ENSMUST00000216100 85 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Gm9785-201ENSMUST00000062642 1006 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.7□□□□□ -0.38
Vti1aO89116 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Vti1aO89116 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Vti1aO89116 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Vti1aO89116 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.7□□□□□ -0.38
Vti1aO89116 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC12.69□□□□□ -0.38
Vti1aO89116 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Vti1aO89116 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 AC107453.4-201ENSMUST00000227068 1817 ntBASIC12.69□□□□□ -0.38
Vti1aO89116 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Vti1aO89116 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Vti1aO89116 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Gm11660-201ENSMUST00000120955 412 ntBASIC12.69□□□□□ -0.38
Vti1aO89116 Gm15566-201ENSMUST00000121130 590 ntBASIC12.69□□□□□ -0.38
Vti1aO89116 Gm16397-201ENSMUST00000122201 494 ntBASIC12.69□□□□□ -0.38
Vti1aO89116 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Vti1aO89116 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Vti1aO89116 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Gm17831-201ENSMUST00000205579 900 ntBASIC12.69□□□□□ -0.38
Vti1aO89116 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.69□□□□□ -0.38
Vti1aO89116 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.69□□□□□ -0.38
Vti1aO89116 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Vti1aO89116 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Vti1aO89116 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Vti1aO89116 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Vti1aO89116 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Vti1aO89116 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Il33-202ENSMUST00000120388 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Vti1aO89116 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms