Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Traf1P39428 Gm15352-201ENSMUST00000118696 270 ntBASIC13.64□□□□□ -0.23
Traf1P39428 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Mir6546-201ENSMUST00000184460 62 ntBASIC13.64□□□□□ -0.23
Traf1P39428 Gm9540-201ENSMUST00000188230 478 ntBASIC13.64□□□□□ -0.23
Traf1P39428 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC13.64□□□□□ -0.23
Traf1P39428 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC13.64□□□□□ -0.23
Traf1P39428 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC13.64□□□□□ -0.23
Traf1P39428 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Gm6867-201ENSMUST00000219165 425 ntBASIC13.64□□□□□ -0.23
Traf1P39428 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Traf1P39428 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 AC124577.2-201ENSMUST00000217413 2420 ntBASIC13.64□□□□□ -0.23
Traf1P39428 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Gm8522-201ENSMUST00000118416 1929 ntBASIC13.64□□□□□ -0.23
Traf1P39428 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC13.64□□□□□ -0.23
Traf1P39428 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Traf1P39428 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Traf1P39428 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Traf1P39428 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Traf1P39428 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Gm42943-201ENSMUST00000199676 3242 ntBASIC13.63□□□□□ -0.23
Traf1P39428 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Traf1P39428 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC13.63□□□□□ -0.23
Traf1P39428 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC13.63□□□□□ -0.23
Traf1P39428 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC13.63□□□□□ -0.23
Traf1P39428 Gm42599-201ENSMUST00000201308 469 ntBASIC13.63□□□□□ -0.23
Traf1P39428 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Traf1P39428 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Traf1P39428 Gm9132-201ENSMUST00000210182 832 ntBASIC13.63□□□□□ -0.23
Traf1P39428 AC122876.1-201ENSMUST00000217619 825 ntBASIC13.63□□□□□ -0.23
Traf1P39428 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC13.63□□□□□ -0.23
Traf1P39428 AC135469.1-201ENSMUST00000225984 772 ntBASIC13.63□□□□□ -0.23
Traf1P39428 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Gm18983-201ENSMUST00000222884 2729 ntBASIC13.63□□□□□ -0.23
Traf1P39428 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Gm14132-201ENSMUST00000117188 1719 ntBASIC13.63□□□□□ -0.23
Traf1P39428 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Traf1P39428 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Traf1P39428 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
Traf1P39428 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Traf1P39428 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Traf1P39428 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Traf1P39428 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Gm44999-201ENSMUST00000207456 1493 ntBASIC13.62□□□□□ -0.23
Traf1P39428 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC13.62□□□□□ -0.23
Traf1P39428 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Gm22920-201ENSMUST00000102175 109 ntBASIC13.62□□□□□ -0.23
Traf1P39428 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC13.62□□□□□ -0.23
Traf1P39428 Gm12029-201ENSMUST00000120073 832 ntBASIC13.62□□□□□ -0.23
Traf1P39428 Gm4726-201ENSMUST00000135604 736 ntBASIC13.62□□□□□ -0.23
Traf1P39428 Gm6019-201ENSMUST00000148369 736 ntBASIC13.62□□□□□ -0.23
Traf1P39428 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Gm23045-201ENSMUST00000175041 96 ntBASIC13.62□□□□□ -0.23
Traf1P39428 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Traf1P39428 Gm6114-201ENSMUST00000182472 968 ntBASIC13.62□□□□□ -0.23
Traf1P39428 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Traf1P39428 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms