Protein–RNA interactions for Protein: P31313

Hoxc11, Homeobox protein Hox-C11, mousemouse

Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc11P31313 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC11.44□□□□□ -0.58
Hoxc11P31313 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC11.44□□□□□ -0.58
Hoxc11P31313 Gm10051-201ENSMUST00000145209 414 ntBASIC11.44□□□□□ -0.58
Hoxc11P31313 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Hoxc11P31313 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC11.44□□□□□ -0.58
Hoxc11P31313 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 AC151275.1-201ENSMUST00000224870 585 ntBASIC11.44□□□□□ -0.58
Hoxc11P31313 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Ginm1-202ENSMUST00000065124 300 ntBASIC11.44□□□□□ -0.58
Hoxc11P31313 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Gm37057-201ENSMUST00000192624 1916 ntBASIC11.44□□□□□ -0.58
Hoxc11P31313 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Hoxc11P31313 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC11.44□□□□□ -0.58
Hoxc11P31313 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxc11P31313 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 CT573086.2-201ENSMUST00000227277 4992 ntBASIC11.43□□□□□ -0.58
Hoxc11P31313 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Gm15131-201ENSMUST00000119124 595 ntBASIC11.43□□□□□ -0.58
Hoxc11P31313 Gm8199-201ENSMUST00000121323 823 ntBASIC11.43□□□□□ -0.58
Hoxc11P31313 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC11.43□□□□□ -0.58
Hoxc11P31313 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC11.43□□□□□ -0.58
Hoxc11P31313 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC11.43□□□□□ -0.58
Hoxc11P31313 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC11.43□□□□□ -0.58
Hoxc11P31313 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Gm4034-201ENSMUST00000187674 480 ntBASIC11.43□□□□□ -0.58
Hoxc11P31313 Gm5051-201ENSMUST00000204085 485 ntBASIC11.43□□□□□ -0.58
Hoxc11P31313 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC11.43□□□□□ -0.58
Hoxc11P31313 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC11.43□□□□□ -0.58
Hoxc11P31313 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxc11P31313 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxc11P31313 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
Hoxc11P31313 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.42□□□□□ -0.58
Hoxc11P31313 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxc11P31313 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Hoxc11P31313 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC11.42□□□□□ -0.58
Hoxc11P31313 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxc11P31313 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Hoxc11P31313 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxc11P31313 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC11.42□□□□□ -0.58
Hoxc11P31313 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxc11P31313 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
Hoxc11P31313 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxc11P31313 Gm13809-201ENSMUST00000117921 597 ntBASIC11.42□□□□□ -0.58
Hoxc11P31313 Gm5419-201ENSMUST00000119301 527 ntBASIC11.42□□□□□ -0.58
Hoxc11P31313 Gm11660-201ENSMUST00000120955 412 ntBASIC11.42□□□□□ -0.58
Hoxc11P31313 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxc11P31313 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxc11P31313 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Hoxc11P31313 Gm10774-201ENSMUST00000188689 204 ntBASIC11.42□□□□□ -0.58
Hoxc11P31313 Gm37246-201ENSMUST00000192665 835 ntBASIC11.42□□□□□ -0.58
Hoxc11P31313 Gm43916-201ENSMUST00000205062 967 ntBASIC11.42□□□□□ -0.58
Hoxc11P31313 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms