Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC11.27□□□□□ -0.61
Lire1P11260 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Lire1P11260 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC11.27□□□□□ -0.61
Lire1P11260 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Gm28581-201ENSMUST00000186086 2177 ntBASIC11.27□□□□□ -0.61
Lire1P11260 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.27□□□□□ -0.61
Lire1P11260 Gm38359-201ENSMUST00000191884 2225 ntBASIC11.27□□□□□ -0.61
Lire1P11260 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Lire1P11260 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC11.27□□□□□ -0.61
Lire1P11260 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 B020004J07Rik-202ENSMUST00000106919 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Apobec3-204ENSMUST00000175714 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Lire1P11260 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Gm21039-201ENSMUST00000223359 2012 ntBASIC11.26□□□□□ -0.61
Lire1P11260 Zbtb21-202ENSMUST00000063605 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 AC127597.1-201ENSMUST00000225697 5711 ntBASIC11.26□□□□□ -0.61
Lire1P11260 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Lire1P11260 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC11.26□□□□□ -0.61
Lire1P11260 Gm14704-201ENSMUST00000120300 874 ntBASIC11.26□□□□□ -0.61
Lire1P11260 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC11.26□□□□□ -0.61
Lire1P11260 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Lire1P11260 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.26□□□□□ -0.61
Lire1P11260 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Gm22121-201ENSMUST00000175148 54 ntBASIC11.26□□□□□ -0.61
Lire1P11260 Gm27341-201ENSMUST00000183570 106 ntBASIC11.26□□□□□ -0.61
Lire1P11260 Gm2260-201ENSMUST00000184965 657 ntBASIC11.26□□□□□ -0.61
Lire1P11260 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.26□□□□□ -0.61
Lire1P11260 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Lire1P11260 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Lire1P11260 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Lire1P11260 Gm44094-201ENSMUST00000204703 2030 ntBASIC11.26□□□□□ -0.61
Lire1P11260 Col6a3-201ENSMUST00000056925 10106 ntTSL 5 BASIC11.26□□□□□ -0.61
Lire1P11260 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Lire1P11260 Trmt44-201ENSMUST00000030980 3790 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Lire1P11260 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Lire1P11260 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lire1P11260 Gm10827-201ENSMUST00000181897 2586 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Slc27a5-201ENSMUST00000032539 2288 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 A730018C14Rik-201ENSMUST00000050754 2253 ntTSL 2 BASIC11.25□□□□□ -0.61
Lire1P11260 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Rerg-201ENSMUST00000032347 2075 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Gm38157-201ENSMUST00000194178 1698 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Gm13492-201ENSMUST00000119772 665 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Gm22902-201ENSMUST00000158488 302 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Gm18916-201ENSMUST00000198264 1246 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Gm19963-201ENSMUST00000208413 1255 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Gm5904-201ENSMUST00000210286 865 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Abhd11os-203ENSMUST00000222613 363 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Gm4366-201ENSMUST00000201488 1342 ntBASIC11.25□□□□□ -0.61
Lire1P11260 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms