Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dysf-204ENSMUST00000113821 6803 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Itsn1-208ENSMUST00000114002 14012 ntAPPRIS P2 TSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 AC211878.3-201ENSMUST00000222629 2018 ntBASIC9.7□□□□□ -0.86
Hmgb3O54879 Fhdc1-201ENSMUST00000091002 4162 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Cgnl1-201ENSMUST00000072899 6754 ntAPPRIS P2 TSL 5 BASIC9.7□□□□□ -0.86
Hmgb3O54879 Trpm2-203ENSMUST00000105401 7274 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
Hmgb3O54879 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 AC153506.1-201ENSMUST00000218768 2915 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Tyro3-202ENSMUST00000110783 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Lox-202ENSMUST00000171470 4468 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Zfp275-202ENSMUST00000114499 6284 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm12859-201ENSMUST00000117834 427 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm8213-201ENSMUST00000118191 441 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm14057-201ENSMUST00000120631 482 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm5912-201ENSMUST00000122282 1438 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm23119-201ENSMUST00000158610 140 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC9.69□□□□□ -0.86
Hmgb3O54879 AC069562.3-201ENSMUST00000225387 587 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Rin1-208ENSMUST00000225427 4503 ntAPPRIS P2 BASIC9.69□□□□□ -0.86
Hmgb3O54879 AC155237.1-201ENSMUST00000226196 1279 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 AC159006.1-201ENSMUST00000226396 258 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Nfkbiz-202ENSMUST00000096026 4067 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC9.69□□□□□ -0.86
Hmgb3O54879 Rreb1-201ENSMUST00000037232 8395 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
Hmgb3O54879 A430105I19Rik-201ENSMUST00000059997 4703 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Adamtsl1-209ENSMUST00000141889 7805 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
Hmgb3O54879 Muc19-202ENSMUST00000160242 9104 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Hmgb3O54879 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Smim1-214ENSMUST00000182191 3535 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Nlrc5-204ENSMUST00000182409 4552 ntTSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Cacna1e-201ENSMUST00000004214 12697 ntTSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Zkscan1-201ENSMUST00000019660 8261 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Gm3287-205ENSMUST00000228893 1332 ntBASIC9.68□□□□□ -0.86
Hmgb3O54879 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC9.68□□□□□ -0.86
Hmgb3O54879 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
Hmgb3O54879 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Hmgb3O54879 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 119.4 ms