Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Scn11aQ9R053 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.75□□□□□ -0.21
Scn11aQ9R053 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Gm44755-201ENSMUST00000207830 2102 ntBASIC13.75□□□□□ -0.21
Scn11aQ9R053 Gm7082-201ENSMUST00000209880 969 ntBASIC13.75□□□□□ -0.21
Scn11aQ9R053 Gm19046-201ENSMUST00000221263 1298 ntBASIC13.75□□□□□ -0.21
Scn11aQ9R053 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Hyal3-201ENSMUST00000040059 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Scn11aQ9R053 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.74□□□□□ -0.21
Scn11aQ9R053 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Gm7719-201ENSMUST00000182374 975 ntBASIC13.74□□□□□ -0.21
Scn11aQ9R053 Gm26918-201ENSMUST00000182496 728 ntTSL 2 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Gm9369-201ENSMUST00000196009 733 ntBASIC13.74□□□□□ -0.21
Scn11aQ9R053 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 AC153152.3-201ENSMUST00000222188 1135 ntBASIC13.74□□□□□ -0.21
Scn11aQ9R053 Gm9915-201ENSMUST00000066196 1383 ntBASIC13.74□□□□□ -0.21
Scn11aQ9R053 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Scn11aQ9R053 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC13.74□□□□□ -0.21
Scn11aQ9R053 AC137950.2-202ENSMUST00000227150 1635 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm5822-201ENSMUST00000161562 1378 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm6322-201ENSMUST00000118789 1004 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm3828-201ENSMUST00000121817 257 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm6157-201ENSMUST00000199935 1897 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Adgrv1-214ENSMUST00000224088 1492 ntBASIC13.73□□□□□ -0.21
Scn11aQ9R053 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Scn11aQ9R053 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms