Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 n-R5s64-201ENSMUST00000102019 119 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm14193-201ENSMUST00000105067 153 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm13408-201ENSMUST00000119822 798 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm13328-201ENSMUST00000120816 1020 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm13935-201ENSMUST00000121859 798 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm3150-201ENSMUST00000166418 204 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm8546-201ENSMUST00000178288 1264 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gm10702-201ENSMUST00000098929 1268 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm43081-201ENSMUST00000199082 1380 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 CT009489.1-201ENSMUST00000227740 1893 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm22920-201ENSMUST00000102175 109 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm15573-201ENSMUST00000119487 540 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm11956-201ENSMUST00000119525 512 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Mup-ps26-201ENSMUST00000121751 202 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm7666-201ENSMUST00000146631 819 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm9211-201ENSMUST00000182882 975 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm29499-201ENSMUST00000189151 486 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm28329-201ENSMUST00000191208 689 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm29171-201ENSMUST00000191397 486 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm45118-201ENSMUST00000208928 825 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm9387-201ENSMUST00000098624 1320 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 AC154639.1-201ENSMUST00000224393 2849 ntBASIC13.85□□□□□ -0.19
Trim56Q80VI1 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim56Q80VI1 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 92.6 ms