Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lsm1Q8VC85 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Lsm1Q8VC85 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lsm1Q8VC85 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lsm1Q8VC85 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.73■□□□□ 0.75
Lsm1Q8VC85 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lsm1Q8VC85 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Lsm1Q8VC85 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lsm1Q8VC85 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lsm1Q8VC85 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lsm1Q8VC85 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.71■□□□□ 0.75
Lsm1Q8VC85 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lsm1Q8VC85 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Lsm1Q8VC85 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Lsm1Q8VC85 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lsm1Q8VC85 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Lsm1Q8VC85 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lsm1Q8VC85 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lsm1Q8VC85 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.68■□□□□ 0.74
Lsm1Q8VC85 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lsm1Q8VC85 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Gm13238-201ENSMUST00000117655 780 ntBASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lsm1Q8VC85 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lsm1Q8VC85 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lsm1Q8VC85 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lsm1Q8VC85 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lsm1Q8VC85 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lsm1Q8VC85 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lsm1Q8VC85 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Lsm1Q8VC85 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Lsm1Q8VC85 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 110.6 ms