Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.82■■□□□ 1.08
Shmt1P50431 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Shmt1P50431 Gm7143-201ENSMUST00000222811 859 ntBASIC21.82■■□□□ 1.08
Shmt1P50431 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Shmt1P50431 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.82■■□□□ 1.08
Shmt1P50431 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Shmt1P50431 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Shmt1P50431 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Shmt1P50431 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Shmt1P50431 Golgb1-201ENSMUST00000023534 498 ntBASIC21.81■■□□□ 1.08
Shmt1P50431 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Shmt1P50431 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Shmt1P50431 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.81■■□□□ 1.08
Shmt1P50431 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Shmt1P50431 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.8■■□□□ 1.08
Shmt1P50431 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
Shmt1P50431 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Shmt1P50431 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Shmt1P50431 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Shmt1P50431 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Shmt1P50431 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.79■■□□□ 1.08
Shmt1P50431 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Shmt1P50431 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.79■■□□□ 1.08
Shmt1P50431 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Shmt1P50431 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
Shmt1P50431 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Shmt1P50431 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Shmt1P50431 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Shmt1P50431 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shmt1P50431 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.78■■□□□ 1.08
Shmt1P50431 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shmt1P50431 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC21.78■■□□□ 1.08
Shmt1P50431 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
Shmt1P50431 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shmt1P50431 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Shmt1P50431 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Shmt1P50431 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Shmt1P50431 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.77■■□□□ 1.08
Shmt1P50431 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Shmt1P50431 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Shmt1P50431 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Shmt1P50431 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Shmt1P50431 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.76■■□□□ 1.07
Shmt1P50431 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.76■■□□□ 1.07
Shmt1P50431 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Shmt1P50431 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Shmt1P50431 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Shmt1P50431 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Shmt1P50431 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Shmt1P50431 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Shmt1P50431 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Shmt1P50431 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Shmt1P50431 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
Shmt1P50431 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.75■■□□□ 1.07
Shmt1P50431 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC21.75■■□□□ 1.07
Shmt1P50431 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.75■■□□□ 1.07
Shmt1P50431 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.75■■□□□ 1.07
Shmt1P50431 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Shmt1P50431 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.75■■□□□ 1.07
Shmt1P50431 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Shmt1P50431 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Shmt1P50431 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Shmt1P50431 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Shmt1P50431 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Shmt1P50431 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
Shmt1P50431 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.74■■□□□ 1.07
Shmt1P50431 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Shmt1P50431 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Shmt1P50431 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Shmt1P50431 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC21.73■■□□□ 1.07
Shmt1P50431 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Shmt1P50431 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Shmt1P50431 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC21.73■■□□□ 1.07
Shmt1P50431 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Shmt1P50431 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Shmt1P50431 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.73■■□□□ 1.07
Shmt1P50431 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Shmt1P50431 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shmt1P50431 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Shmt1P50431 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shmt1P50431 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shmt1P50431 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shmt1P50431 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shmt1P50431 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shmt1P50431 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Shmt1P50431 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shmt1P50431 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shmt1P50431 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shmt1P50431 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shmt1P50431 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
Shmt1P50431 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.71■■□□□ 1.07
Shmt1P50431 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.71■■□□□ 1.07
Shmt1P50431 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shmt1P50431 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shmt1P50431 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Shmt1P50431 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
Shmt1P50431 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Shmt1P50431 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Shmt1P50431 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Shmt1P50431 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms