Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx2P43241 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC19.7■□□□□ 0.74
Cdx2P43241 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Cdx2P43241 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Gm10493-201ENSMUST00000097270 612 ntBASIC19.7■□□□□ 0.74
Cdx2P43241 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx2P43241 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdx2P43241 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdx2P43241 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdx2P43241 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
Cdx2P43241 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdx2P43241 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdx2P43241 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdx2P43241 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdx2P43241 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Cdx2P43241 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.68■□□□□ 0.74
Cdx2P43241 Gm26571-201ENSMUST00000181399 666 ntBASIC19.68■□□□□ 0.74
Cdx2P43241 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdx2P43241 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdx2P43241 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cdx2P43241 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdx2P43241 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.67■□□□□ 0.74
Cdx2P43241 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdx2P43241 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.66■□□□□ 0.74
Cdx2P43241 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.66■□□□□ 0.74
Cdx2P43241 Gm42569-201ENSMUST00000200539 472 ntBASIC19.66■□□□□ 0.74
Cdx2P43241 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cdx2P43241 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.66■□□□□ 0.74
Cdx2P43241 Gm40848-201ENSMUST00000221998 324 ntBASIC19.66■□□□□ 0.74
Cdx2P43241 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdx2P43241 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdx2P43241 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Cdx2P43241 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC19.66■□□□□ 0.74
Cdx2P43241 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdx2P43241 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx2P43241 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.65■□□□□ 0.74
Cdx2P43241 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx2P43241 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx2P43241 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.65■□□□□ 0.74
Cdx2P43241 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx2P43241 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx2P43241 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx2P43241 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cdx2P43241 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx2P43241 Gm27405-201ENSMUST00000184201 112 ntBASIC19.64■□□□□ 0.73
Cdx2P43241 Gm42642-201ENSMUST00000200683 355 ntBASIC19.64■□□□□ 0.73
Cdx2P43241 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx2P43241 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
Cdx2P43241 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx2P43241 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx2P43241 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx2P43241 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Cdx2P43241 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx2P43241 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx2P43241 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx2P43241 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cdx2P43241 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cdx2P43241 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdx2P43241 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdx2P43241 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.63■□□□□ 0.73
Cdx2P43241 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.63■□□□□ 0.73
Cdx2P43241 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.63■□□□□ 0.73
Cdx2P43241 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.63■□□□□ 0.73
Cdx2P43241 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.63■□□□□ 0.73
Cdx2P43241 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdx2P43241 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdx2P43241 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Cdx2P43241 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdx2P43241 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.62■□□□□ 0.73
Cdx2P43241 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.62■□□□□ 0.73
Cdx2P43241 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.62■□□□□ 0.73
Cdx2P43241 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.62■□□□□ 0.73
Cdx2P43241 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.62■□□□□ 0.73
Cdx2P43241 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdx2P43241 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdx2P43241 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cdx2P43241 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdx2P43241 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Cdx2P43241 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cdx2P43241 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdx2P43241 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdx2P43241 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.6■□□□□ 0.73
Cdx2P43241 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Cdx2P43241 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Cdx2P43241 Gm10209-201ENSMUST00000203397 1607 ntBASIC19.6■□□□□ 0.73
Cdx2P43241 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cdx2P43241 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdx2P43241 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cdx2P43241 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cdx2P43241 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms