Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp6P0C0A3 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp6P0C0A3 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Chmp6P0C0A3 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp6P0C0A3 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC22.26■■□□□ 1.15
Chmp6P0C0A3 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp6P0C0A3 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp6P0C0A3 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
Chmp6P0C0A3 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Chmp6P0C0A3 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Chmp6P0C0A3 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC22.24■■□□□ 1.15
Chmp6P0C0A3 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Chmp6P0C0A3 Gm37415-201ENSMUST00000192265 2054 ntBASIC22.24■■□□□ 1.15
Chmp6P0C0A3 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC22.24■■□□□ 1.15
Chmp6P0C0A3 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Chmp6P0C0A3 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Chmp6P0C0A3 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Chmp6P0C0A3 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Chmp6P0C0A3 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Gm12504-201ENSMUST00000120860 2231 ntBASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Chmp6P0C0A3 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Chmp6P0C0A3 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Chmp6P0C0A3 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Chmp6P0C0A3 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Chmp6P0C0A3 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
Chmp6P0C0A3 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Chmp6P0C0A3 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Chmp6P0C0A3 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Chmp6P0C0A3 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Chmp6P0C0A3 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC22.2■■□□□ 1.14
Chmp6P0C0A3 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC22.2■■□□□ 1.14
Chmp6P0C0A3 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Chmp6P0C0A3 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Chmp6P0C0A3 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Chmp6P0C0A3 Hsf1-207ENSMUST00000228371 2102 ntBASIC22.19■■□□□ 1.14
Chmp6P0C0A3 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chmp6P0C0A3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Chmp6P0C0A3 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Chmp6P0C0A3 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chmp6P0C0A3 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chmp6P0C0A3 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Chmp6P0C0A3 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Chmp6P0C0A3 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chmp6P0C0A3 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC22.18■■□□□ 1.14
Chmp6P0C0A3 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC22.18■■□□□ 1.14
Chmp6P0C0A3 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chmp6P0C0A3 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Chmp6P0C0A3 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chmp6P0C0A3 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chmp6P0C0A3 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chmp6P0C0A3 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Chmp6P0C0A3 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
Chmp6P0C0A3 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chmp6P0C0A3 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Chmp6P0C0A3 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Chmp6P0C0A3 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Chmp6P0C0A3 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Chmp6P0C0A3 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC22.16■■□□□ 1.14
Chmp6P0C0A3 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Chmp6P0C0A3 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Chmp6P0C0A3 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Chmp6P0C0A3 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chmp6P0C0A3 AC164883.3-201ENSMUST00000227396 1774 ntBASIC22.15■■□□□ 1.14
Chmp6P0C0A3 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC22.15■■□□□ 1.14
Chmp6P0C0A3 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chmp6P0C0A3 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Chmp6P0C0A3 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
Chmp6P0C0A3 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Chmp6P0C0A3 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
Chmp6P0C0A3 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
Chmp6P0C0A3 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC22.14■■□□□ 1.13
Chmp6P0C0A3 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Chmp6P0C0A3 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
Chmp6P0C0A3 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms