Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Hmgb3O54879 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Hmgb3O54879 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb3O54879 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb3O54879 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb3O54879 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC17.03■□□□□ 0.32
Hmgb3O54879 Gm45364-201ENSMUST00000210883 159 ntBASIC17.03■□□□□ 0.32
Hmgb3O54879 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb3O54879 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb3O54879 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Hmgb3O54879 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb3O54879 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb3O54879 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb3O54879 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Hmgb3O54879 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Hmgb3O54879 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
Hmgb3O54879 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Hmgb3O54879 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Hmgb3O54879 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.02■□□□□ 0.31
Hmgb3O54879 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb3O54879 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb3O54879 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb3O54879 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb3O54879 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb3O54879 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb3O54879 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb3O54879 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb3O54879 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb3O54879 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC17■□□□□ 0.31
Hmgb3O54879 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Hmgb3O54879 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC17■□□□□ 0.31
Hmgb3O54879 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb3O54879 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb3O54879 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC17■□□□□ 0.31
Hmgb3O54879 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb3O54879 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb3O54879 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Hmgb3O54879 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC16.99■□□□□ 0.31
Hmgb3O54879 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb3O54879 AC154454.1-201ENSMUST00000225253 216 ntBASIC16.98■□□□□ 0.31
Hmgb3O54879 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb3O54879 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb3O54879 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb3O54879 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Hmgb3O54879 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC16.97■□□□□ 0.31
Hmgb3O54879 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb3O54879 Snhg20-203ENSMUST00000182811 2153 ntBASIC16.96■□□□□ 0.31
Hmgb3O54879 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb3O54879 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC16.96■□□□□ 0.31
Hmgb3O54879 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Hmgb3O54879 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb3O54879 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb3O54879 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb3O54879 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb3O54879 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb3O54879 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Hmgb3O54879 Dapk1-207ENSMUST00000226059 5009 ntBASIC16.96■□□□□ 0.31
Hmgb3O54879 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Hmgb3O54879 Gm43403-201ENSMUST00000198011 1786 ntBASIC16.96■□□□□ 0.31
Hmgb3O54879 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Hmgb3O54879 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Hmgb3O54879 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC16.96■□□□□ 0.3
Hmgb3O54879 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb3O54879 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb3O54879 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC16.95■□□□□ 0.3
Hmgb3O54879 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb3O54879 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb3O54879 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Hmgb3O54879 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC16.95■□□□□ 0.3
Hmgb3O54879 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb3O54879 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb3O54879 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Hmgb3O54879 Gm34220-201ENSMUST00000223001 2709 ntBASIC16.94■□□□□ 0.3
Hmgb3O54879 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb3O54879 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Hmgb3O54879 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Hmgb3O54879 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb3O54879 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb3O54879 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Hmgb3O54879 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms