Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk3O35492 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk3O35492 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.43■□□□□ 0.7
Clk3O35492 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.43■□□□□ 0.7
Clk3O35492 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clk3O35492 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk3O35492 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk3O35492 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk3O35492 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Clk3O35492 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.42■□□□□ 0.7
Clk3O35492 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk3O35492 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk3O35492 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk3O35492 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk3O35492 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk3O35492 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Clk3O35492 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.41■□□□□ 0.7
Clk3O35492 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clk3O35492 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.41■□□□□ 0.7
Clk3O35492 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clk3O35492 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk3O35492 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk3O35492 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Clk3O35492 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk3O35492 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk3O35492 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.4■□□□□ 0.7
Clk3O35492 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk3O35492 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk3O35492 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Clk3O35492 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Gm13238-201ENSMUST00000117655 780 ntBASIC19.39■□□□□ 0.69
Clk3O35492 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Clk3O35492 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Clk3O35492 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.39■□□□□ 0.69
Clk3O35492 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Clk3O35492 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clk3O35492 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Clk3O35492 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.38■□□□□ 0.69
Clk3O35492 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clk3O35492 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clk3O35492 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.38■□□□□ 0.69
Clk3O35492 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk3O35492 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Clk3O35492 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Clk3O35492 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Clk3O35492 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk3O35492 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.37■□□□□ 0.69
Clk3O35492 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Clk3O35492 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Clk3O35492 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk3O35492 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk3O35492 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk3O35492 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clk3O35492 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clk3O35492 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.36■□□□□ 0.69
Clk3O35492 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.36■□□□□ 0.69
Clk3O35492 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clk3O35492 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clk3O35492 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.36■□□□□ 0.69
Clk3O35492 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.36■□□□□ 0.69
Clk3O35492 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.36■□□□□ 0.69
Clk3O35492 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clk3O35492 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clk3O35492 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clk3O35492 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19.36■□□□□ 0.69
Clk3O35492 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk3O35492 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk3O35492 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk3O35492 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Clk3O35492 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Clk3O35492 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk3O35492 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk3O35492 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Clk3O35492 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk3O35492 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Clk3O35492 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Clk3O35492 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk3O35492 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk3O35492 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk3O35492 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk3O35492 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Clk3O35492 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Clk3O35492 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk3O35492 Gm10232-201ENSMUST00000089221 720 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms