Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.28■□□□□ 0.84
Chd3B1AR17 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chd3B1AR17 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chd3B1AR17 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Chd3B1AR17 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.27■□□□□ 0.84
Chd3B1AR17 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chd3B1AR17 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Chd3B1AR17 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chd3B1AR17 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chd3B1AR17 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Chd3B1AR17 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.27■□□□□ 0.84
Chd3B1AR17 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Chd3B1AR17 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Chd3B1AR17 Gm43530-201ENSMUST00000195920 274 ntBASIC20.26■□□□□ 0.83
Chd3B1AR17 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Chd3B1AR17 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chd3B1AR17 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chd3B1AR17 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.26■□□□□ 0.83
Chd3B1AR17 Serp2-204ENSMUST00000228055 705 ntBASIC20.26■□□□□ 0.83
Chd3B1AR17 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chd3B1AR17 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chd3B1AR17 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
Chd3B1AR17 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Chd3B1AR17 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chd3B1AR17 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chd3B1AR17 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chd3B1AR17 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chd3B1AR17 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.24■□□□□ 0.83
Chd3B1AR17 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Chd3B1AR17 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chd3B1AR17 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Chd3B1AR17 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Chd3B1AR17 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chd3B1AR17 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chd3B1AR17 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chd3B1AR17 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chd3B1AR17 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chd3B1AR17 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Chd3B1AR17 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Chd3B1AR17 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Chd3B1AR17 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chd3B1AR17 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chd3B1AR17 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chd3B1AR17 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 Gm12251-201ENSMUST00000117893 792 ntBASIC20.21■□□□□ 0.83
Chd3B1AR17 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.21■□□□□ 0.83
Chd3B1AR17 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Chd3B1AR17 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd3B1AR17 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.2■□□□□ 0.83
Chd3B1AR17 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Chd3B1AR17 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chd3B1AR17 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd3B1AR17 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd3B1AR17 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Chd3B1AR17 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd3B1AR17 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd3B1AR17 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chd3B1AR17 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd3B1AR17 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd3B1AR17 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd3B1AR17 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.19■□□□□ 0.82
Chd3B1AR17 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Chd3B1AR17 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Chd3B1AR17 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chd3B1AR17 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chd3B1AR17 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.18■□□□□ 0.82
Chd3B1AR17 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
Chd3B1AR17 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Chd3B1AR17 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.18■□□□□ 0.82
Chd3B1AR17 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd3B1AR17 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chd3B1AR17 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chd3B1AR17 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Chd3B1AR17 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Chd3B1AR17 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.17■□□□□ 0.82
Chd3B1AR17 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Chd3B1AR17 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chd3B1AR17 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chd3B1AR17 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Chd3B1AR17 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.15■□□□□ 0.82
Chd3B1AR17 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.15■□□□□ 0.82
Chd3B1AR17 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.15■□□□□ 0.82
Chd3B1AR17 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Chd3B1AR17 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Chd3B1AR17 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms