Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Chd6A3KFM7 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.09■□□□□ 0.33
Chd6A3KFM7 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd6A3KFM7 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.09■□□□□ 0.33
Chd6A3KFM7 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd6A3KFM7 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd6A3KFM7 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.09■□□□□ 0.33
Chd6A3KFM7 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
Chd6A3KFM7 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chd6A3KFM7 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chd6A3KFM7 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chd6A3KFM7 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chd6A3KFM7 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.08■□□□□ 0.33
Chd6A3KFM7 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Chd6A3KFM7 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chd6A3KFM7 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chd6A3KFM7 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chd6A3KFM7 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.08■□□□□ 0.32
Chd6A3KFM7 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chd6A3KFM7 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chd6A3KFM7 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Chd6A3KFM7 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Chd6A3KFM7 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Chd6A3KFM7 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 AC117245.4-201ENSMUST00000217388 1646 ntBASIC17.07■□□□□ 0.32
Chd6A3KFM7 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.07■□□□□ 0.32
Chd6A3KFM7 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Chd6A3KFM7 Mir5133-201ENSMUST00000174955 77 ntBASIC17.06■□□□□ 0.32
Chd6A3KFM7 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC17.06■□□□□ 0.32
Chd6A3KFM7 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Chd6A3KFM7 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd6A3KFM7 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chd6A3KFM7 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chd6A3KFM7 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.05■□□□□ 0.32
Chd6A3KFM7 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chd6A3KFM7 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Chd6A3KFM7 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chd6A3KFM7 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd6A3KFM7 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd6A3KFM7 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC17.04■□□□□ 0.32
Chd6A3KFM7 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd6A3KFM7 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.04■□□□□ 0.32
Chd6A3KFM7 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Chd6A3KFM7 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Chd6A3KFM7 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd6A3KFM7 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Chd6A3KFM7 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd6A3KFM7 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd6A3KFM7 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd6A3KFM7 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Chd6A3KFM7 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Chd6A3KFM7 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Chd6A3KFM7 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.02■□□□□ 0.32
Chd6A3KFM7 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.02■□□□□ 0.32
Chd6A3KFM7 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Chd6A3KFM7 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Chd6A3KFM7 Gm21362-201ENSMUST00000194272 928 ntBASIC17.02■□□□□ 0.31
Chd6A3KFM7 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Chd6A3KFM7 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Chd6A3KFM7 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Gm43759-201ENSMUST00000196925 1261 ntBASIC17.01■□□□□ 0.31
Chd6A3KFM7 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Chd6A3KFM7 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Chd6A3KFM7 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Chd6A3KFM7 AC153890.1-201ENSMUST00000220021 2469 ntBASIC17.01■□□□□ 0.31
Chd6A3KFM7 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Chd6A3KFM7 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17■□□□□ 0.31
Chd6A3KFM7 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Chd6A3KFM7 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17■□□□□ 0.31
Chd6A3KFM7 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Chd6A3KFM7 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Chd6A3KFM7 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Chd6A3KFM7 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms