Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Mir8091-201ENSMUST00000183602 139 ntBASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Mir6396-201ENSMUST00000183603 111 ntBASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Gm28180-201ENSMUST00000189608 722 ntBASIC15.66■□□□□ 0.1
Scn4aQ9ER60 AC124772.3-201ENSMUST00000222535 575 ntBASIC15.66■□□□□ 0.1
Scn4aQ9ER60 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 1700092E19Rik-202ENSMUST00000154703 1650 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Gm15033-201ENSMUST00000118188 673 ntBASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Gm15702-201ENSMUST00000119680 444 ntBASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Gm23555-201ENSMUST00000157815 135 ntBASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Gm19246-201ENSMUST00000173599 255 ntBASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Fam240a-201ENSMUST00000177678 499 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Ighv1-8-201ENSMUST00000192236 293 ntBASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Gm45308-201ENSMUST00000210610 415 ntBASIC15.65■□□□□ 0.1
Scn4aQ9ER60 AC158518.1-201ENSMUST00000216435 320 ntTSL 5 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Gm31497-201ENSMUST00000216981 638 ntTSL 5 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 AC122357.1-202ENSMUST00000221436 633 ntTSL 2 BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Klf10-203ENSMUST00000227920 2144 ntBASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn4aQ9ER60 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Scn4aQ9ER60 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm15599-201ENSMUST00000122283 1345 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Rab38-201ENSMUST00000107256 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Dtymk-203ENSMUST00000112893 1040 ntTSL 2 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm8754-201ENSMUST00000118391 520 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm8163-201ENSMUST00000122020 1060 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Sectm1b-206ENSMUST00000168459 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm5342-201ENSMUST00000181982 1003 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Mir8111-201ENSMUST00000184463 137 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Tmem212-201ENSMUST00000058077 716 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm9869-201ENSMUST00000063858 375 ntTSL 5 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm44758-201ENSMUST00000206096 2068 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 AC116596.1-201ENSMUST00000228112 1762 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm24066-201ENSMUST00000104515 131 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm13547-202ENSMUST00000113810 629 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Sgcg-202ENSMUST00000121148 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Elobl-203ENSMUST00000121228 704 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm6881-201ENSMUST00000121811 833 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 7330404K18Rik-201ENSMUST00000125558 487 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 2210408F21Rik-209ENSMUST00000146778 579 ntTSL 5 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm15664-201ENSMUST00000160167 184 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Slirp-202ENSMUST00000160488 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm22616-201ENSMUST00000179783 100 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm27833-201ENSMUST00000184285 124 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Tmem238l-203ENSMUST00000211300 930 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 AC159196.1-201ENSMUST00000225524 377 ntBASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Scn4aQ9ER60 Gm42928-201ENSMUST00000197338 3339 ntBASIC15.63■□□□□ 0.09
Scn4aQ9ER60 Gm44942-201ENSMUST00000096093 2072 ntBASIC15.63■□□□□ 0.09
Scn4aQ9ER60 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 125.5 ms