Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm11663-201ENSMUST00000117888 290 ntBASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm12217-201ENSMUST00000118858 696 ntBASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm15207-201ENSMUST00000119259 442 ntBASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm12266-201ENSMUST00000120311 962 ntBASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Mir219a-1-201ENSMUST00000083621 110 ntBASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Gm37542-201ENSMUST00000192563 2832 ntBASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Brf1Q8CFK2 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 AC124397.2-201ENSMUST00000225575 2215 ntBASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 AC113441.2-201ENSMUST00000221538 1468 ntBASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Gm7857-201ENSMUST00000117957 358 ntBASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 AU022133-201ENSMUST00000200601 873 ntBASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Rps4l-202ENSMUST00000204242 789 ntBASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 AC151275.1-201ENSMUST00000224870 585 ntBASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 AC126257.2-201ENSMUST00000215507 2300 ntBASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Brf1Q8CFK2 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Brf1Q8CFK2 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Brf1Q8CFK2 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Brf1Q8CFK2 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Brf1Q8CFK2 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Brf1Q8CFK2 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Brf1Q8CFK2 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Brf1Q8CFK2 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Gm16505-201ENSMUST00000179981 232 ntBASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Mir6927-201ENSMUST00000184494 71 ntBASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Gm45575-201ENSMUST00000210283 548 ntBASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Gm5363-201ENSMUST00000211927 938 ntBASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Gm21811-201ENSMUST00000096485 930 ntBASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Brf1Q8CFK2 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms