Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Gm16505-201ENSMUST00000179981 232 ntBASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Gm45925-201ENSMUST00000218882 744 ntBASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Gm10076-201ENSMUST00000073238 384 ntBASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Gm22058-201ENSMUST00000083393 310 ntBASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gm6015-201ENSMUST00000217493 1586 ntBASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gm18782-201ENSMUST00000209023 1399 ntBASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gm44405-201ENSMUST00000198952 126 ntBASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gm43138-201ENSMUST00000199123 708 ntBASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col28a1Q2UY11 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col28a1Q2UY11 Gm6560-201ENSMUST00000198588 1591 ntBASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms