Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC13.92□□□□□ -0.18
Trim56Q80VI1 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Gm7395-201ENSMUST00000216059 1045 ntBASIC13.92□□□□□ -0.18
Trim56Q80VI1 AC134860.1-201ENSMUST00000224867 660 ntBASIC13.92□□□□□ -0.18
Trim56Q80VI1 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Arhgef3-204ENSMUST00000225949 3198 ntBASIC13.91□□□□□ -0.18
Trim56Q80VI1 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Gm11700-201ENSMUST00000119409 403 ntBASIC13.91□□□□□ -0.18
Trim56Q80VI1 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
Trim56Q80VI1 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Mir6546-201ENSMUST00000184460 62 ntBASIC13.91□□□□□ -0.18
Trim56Q80VI1 Gm10774-201ENSMUST00000188689 204 ntBASIC13.91□□□□□ -0.18
Trim56Q80VI1 Gm43378-201ENSMUST00000199336 582 ntBASIC13.91□□□□□ -0.18
Trim56Q80VI1 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Mir7686-201ENSMUST00000200604 57 ntBASIC13.91□□□□□ -0.18
Trim56Q80VI1 Nsd1-205ENSMUST00000224693 852 ntBASIC13.91□□□□□ -0.18
Trim56Q80VI1 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim56Q80VI1 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Trim56Q80VI1 Gm21998-201ENSMUST00000117552 1308 ntBASIC13.9□□□□□ -0.18
Trim56Q80VI1 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Gm13611-201ENSMUST00000118269 318 ntBASIC13.9□□□□□ -0.18
Trim56Q80VI1 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Gm34767-201ENSMUST00000191813 1062 ntBASIC13.9□□□□□ -0.18
Trim56Q80VI1 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC13.9□□□□□ -0.18
Trim56Q80VI1 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 AC159819.2-201ENSMUST00000216151 342 ntBASIC13.9□□□□□ -0.18
Trim56Q80VI1 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim56Q80VI1 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Trim56Q80VI1 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms