Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm12266-201ENSMUST00000120311 962 ntBASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gm6039-201ENSMUST00000121667 1250 ntBASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gm9192-201ENSMUST00000183221 985 ntBASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gm28686-201ENSMUST00000187404 609 ntBASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Gm4959-201ENSMUST00000197271 1044 ntBASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Upf3bQ3ULL6 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Gm17040-202ENSMUST00000170597 889 ntBASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Gm28450-201ENSMUST00000187349 638 ntBASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Gm5363-201ENSMUST00000211927 938 ntBASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Upf3bQ3ULL6 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Upf3bQ3ULL6 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Upf3bQ3ULL6 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Gm12857-201ENSMUST00000117678 592 ntBASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 AC159747.1-201ENSMUST00000219903 265 ntBASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 CT025694.1-201ENSMUST00000226188 934 ntBASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 AC133602.1-201ENSMUST00000227510 509 ntBASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms