Protein–RNA interactions for Protein: Q07643

Col9a2, Collagen alpha-2(IX) chain, mousemouse

Predictions only

Length 688 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a2Q07643 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Col9a2Q07643 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col9a2Q07643 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Col9a2Q07643 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col9a2Q07643 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col9a2Q07643 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col9a2Q07643 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col9a2Q07643 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col9a2Q07643 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col9a2Q07643 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Col9a2Q07643 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Col9a2Q07643 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Col9a2Q07643 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Col9a2Q07643 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.78□□□□□ -0.36
Col9a2Q07643 Mir1956-201ENSMUST00000157748 65 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm5778-201ENSMUST00000171003 1072 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm6114-201ENSMUST00000182472 968 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Mir8093-201ENSMUST00000185043 137 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm37905-201ENSMUST00000195310 341 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm38314-201ENSMUST00000195709 625 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm9645-201ENSMUST00000197131 792 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.78□□□□□ -0.36
Col9a2Q07643 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.78□□□□□ -0.36
Col9a2Q07643 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.78□□□□□ -0.36
Col9a2Q07643 AC159103.1-201ENSMUST00000228325 429 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Col9a2Q07643 Erich3-203ENSMUST00000189969 3460 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm1840-201ENSMUST00000051687 1432 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.78□□□□□ -0.36
Col9a2Q07643 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col9a2Q07643 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
Col9a2Q07643 Gm18198-201ENSMUST00000204986 1551 ntBASIC12.77□□□□□ -0.36
Col9a2Q07643 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col9a2Q07643 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col9a2Q07643 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col9a2Q07643 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col9a2Q07643 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col9a2Q07643 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col9a2Q07643 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col9a2Q07643 Gm21358-201ENSMUST00000191645 1659 ntBASIC12.77□□□□□ -0.36
Col9a2Q07643 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.77□□□□□ -0.36
Col9a2Q07643 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col9a2Q07643 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.77□□□□□ -0.36
Col9a2Q07643 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.37
Col9a2Q07643 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col9a2Q07643 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC12.77□□□□□ -0.37
Col9a2Q07643 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC12.77□□□□□ -0.37
Col9a2Q07643 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC12.77□□□□□ -0.37
Col9a2Q07643 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC12.77□□□□□ -0.37
Col9a2Q07643 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC12.77□□□□□ -0.37
Col9a2Q07643 Gm21092-201ENSMUST00000178995 955 ntBASIC12.77□□□□□ -0.37
Col9a2Q07643 Gm17889-201ENSMUST00000198410 598 ntBASIC12.77□□□□□ -0.37
Col9a2Q07643 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Col9a2Q07643 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Gm6430-201ENSMUST00000054664 1248 ntBASIC12.77□□□□□ -0.37
Col9a2Q07643 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Col9a2Q07643 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col9a2Q07643 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Col9a2Q07643 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Col9a2Q07643 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col9a2Q07643 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a2Q07643 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a2Q07643 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a2Q07643 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.76□□□□□ -0.37
Col9a2Q07643 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a2Q07643 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col9a2Q07643 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms