Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm13809-201ENSMUST00000117921 597 ntBASIC12.79□□□□□ -0.36
Vti1aO89116 Gm15573-201ENSMUST00000119487 540 ntBASIC12.79□□□□□ -0.36
Vti1aO89116 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC12.79□□□□□ -0.36
Vti1aO89116 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm8343-201ENSMUST00000182705 994 ntBASIC12.79□□□□□ -0.36
Vti1aO89116 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm10774-201ENSMUST00000188689 204 ntBASIC12.79□□□□□ -0.36
Vti1aO89116 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC12.79□□□□□ -0.36
Vti1aO89116 Gm44551-201ENSMUST00000208804 171 ntBASIC12.79□□□□□ -0.36
Vti1aO89116 Gm45909-201ENSMUST00000212413 1031 ntBASIC12.79□□□□□ -0.36
Vti1aO89116 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC12.79□□□□□ -0.36
Vti1aO89116 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Vti1aO89116 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Vti1aO89116 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Akap12-202ENSMUST00000215696 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.79□□□□□ -0.36
Vti1aO89116 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Vti1aO89116 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC12.79□□□□□ -0.36
Vti1aO89116 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vti1aO89116 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.78□□□□□ -0.36
Vti1aO89116 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Vti1aO89116 Gm9072-201ENSMUST00000218390 1514 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Vti1aO89116 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC12.78□□□□□ -0.36
Vti1aO89116 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Vti1aO89116 Gm14460-201ENSMUST00000121511 639 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Gm6397-201ENSMUST00000161973 1069 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Vti1aO89116 Mir6546-201ENSMUST00000184460 62 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Gm18711-201ENSMUST00000199341 750 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Vti1aO89116 Gm7395-201ENSMUST00000216059 1045 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Gm7551-201ENSMUST00000089593 1074 ntBASIC12.78□□□□□ -0.36
Vti1aO89116 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.78□□□□□ -0.36
Vti1aO89116 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.78□□□□□ -0.36
Vti1aO89116 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Vti1aO89116 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vti1aO89116 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Vti1aO89116 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vti1aO89116 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vti1aO89116 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Vti1aO89116 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Vti1aO89116 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Vti1aO89116 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Vti1aO89116 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vti1aO89116 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vti1aO89116 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Vti1aO89116 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.36
Vti1aO89116 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vti1aO89116 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Vti1aO89116 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.77□□□□□ -0.36
Vti1aO89116 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vti1aO89116 Prrx1-201ENSMUST00000027878 4952 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Vti1aO89116 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Vti1aO89116 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Vti1aO89116 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Vti1aO89116 Gm11509-201ENSMUST00000117358 325 ntBASIC12.77□□□□□ -0.37
Vti1aO89116 Gm11663-201ENSMUST00000117888 290 ntBASIC12.77□□□□□ -0.37
Vti1aO89116 Gm14724-201ENSMUST00000118400 537 ntBASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms