Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gm43931-201ENSMUST00000204817 2870 ntBASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gm10434-201ENSMUST00000101158 471 ntBASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gm26871-204ENSMUST00000181310 523 ntTSL 3 BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gm37629-201ENSMUST00000193635 1050 ntBASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gm37720-201ENSMUST00000195497 1241 ntBASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 AC125209.1-201ENSMUST00000225812 766 ntBASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Gm13135-201ENSMUST00000117628 3121 ntBASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Trim39Q9ESN2 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm14740-201ENSMUST00000118538 1150 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm11793-201ENSMUST00000120433 981 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm13342-201ENSMUST00000121055 207 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 A330048O09Rik-201ENSMUST00000180777 672 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm37201-201ENSMUST00000191845 523 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm38158-201ENSMUST00000194617 339 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm38170-201ENSMUST00000195404 816 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 D530018E20Rik-201ENSMUST00000205107 958 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm45610-201ENSMUST00000209227 784 ntBASIC11.17□□□□□ -0.62
Trim39Q9ESN2 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Brat1-202ENSMUST00000100505 3431 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Trim39Q9ESN2 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Gm13392-201ENSMUST00000117708 150 ntBASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Gm13875-201ENSMUST00000120162 282 ntBASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Gm13299-201ENSMUST00000133644 425 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Trim39Q9ESN2 Gm13307-202ENSMUST00000142990 425 ntTSL 5 BASIC11.16□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms