Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.16□□□□□ -0.3
Trim47Q8C0E3 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Gm13809-201ENSMUST00000117921 597 ntBASIC13.16□□□□□ -0.3
Trim47Q8C0E3 n-R5s14-201ENSMUST00000122688 107 ntBASIC13.16□□□□□ -0.3
Trim47Q8C0E3 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Gm38216-201ENSMUST00000194872 1214 ntBASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Gm6450-201ENSMUST00000200896 574 ntBASIC13.16□□□□□ -0.3
Trim47Q8C0E3 E330011O21Rik-205ENSMUST00000211317 1062 ntTSL 5 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 AC153912.1-201ENSMUST00000217011 724 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 AC154276.3-201ENSMUST00000227643 998 ntBASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Gm44831-201ENSMUST00000208469 2989 ntBASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 AC138329.2-201ENSMUST00000225579 1842 ntBASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim47Q8C0E3 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Gm9129-201ENSMUST00000218173 1689 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 AC130671.2-201ENSMUST00000227224 1621 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Gm42997-202ENSMUST00000200321 985 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 AC154517.1-201ENSMUST00000222785 629 ntTSL 3 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Ntng1-201ENSMUST00000051253 327 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Ginm1-202ENSMUST00000065124 300 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Gm5537-201ENSMUST00000091117 1252 ntBASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim47Q8C0E3 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC13.15□□□□□ -0.31
Trim47Q8C0E3 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim47Q8C0E3 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 80.2 ms