Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 n-R5s14-201ENSMUST00000122688 107 ntBASIC13.94□□□□□ -0.18
Trim56Q80VI1 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 AC154276.3-201ENSMUST00000227643 998 ntBASIC13.94□□□□□ -0.18
Trim56Q80VI1 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Gm9129-201ENSMUST00000218173 1689 ntBASIC13.94□□□□□ -0.18
Trim56Q80VI1 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Trim56Q80VI1 Gm3836-201ENSMUST00000211377 1613 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm1840-201ENSMUST00000051687 1432 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm15566-201ENSMUST00000121130 590 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm10051-201ENSMUST00000145209 414 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm8459-201ENSMUST00000162504 760 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Mir8093-201ENSMUST00000185043 137 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm9540-201ENSMUST00000188230 478 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 AC112945.1-201ENSMUST00000226413 514 ntBASIC13.93□□□□□ -0.18
Trim56Q80VI1 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Trim56Q80VI1 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 AC122840.1-201ENSMUST00000220915 3334 ntBASIC13.92□□□□□ -0.18
Trim56Q80VI1 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Gm43242-201ENSMUST00000199507 1776 ntBASIC13.92□□□□□ -0.18
Trim56Q80VI1 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC13.92□□□□□ -0.18
Trim56Q80VI1 Gm6905-201ENSMUST00000205729 511 ntBASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms