Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col18a1P39061 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Rps23-ps1-201ENSMUST00000116115 425 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 Gm5510-201ENSMUST00000117826 486 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 Rps23-ps2-201ENSMUST00000146939 432 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 Gm16080-201ENSMUST00000152128 692 ntTSL 3 BASIC15.31■□□□□ 0.04
Col18a1P39061 Gm17782-201ENSMUST00000174345 880 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 Snord55-201ENSMUST00000174939 79 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 Gm16619-201ENSMUST00000181817 1210 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Mpzl1-203ENSMUST00000191818 853 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Olfr1417-201ENSMUST00000061235 948 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col18a1P39061 Taar5-201ENSMUST00000092659 1014 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col18a1P39061 Tekt2-202ENSMUST00000102616 1542 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col18a1P39061 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col18a1P39061 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Col18a1P39061 Prr27-202ENSMUST00000101056 1337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Zscan21-201ENSMUST00000062350 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
Col18a1P39061 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col18a1P39061 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC15.31■□□□□ 0.04
Col18a1P39061 Igkv3-10-201ENSMUST00000103397 356 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Col18a1P39061 Eif4e1b-210ENSMUST00000152204 859 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Gm4778-202ENSMUST00000159517 1241 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col18a1P39061 Vmn2r-ps9-201ENSMUST00000177446 1099 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 Gm28671-201ENSMUST00000187036 692 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 AC163638.2-201ENSMUST00000224920 827 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 Fthl17a-201ENSMUST00000048382 835 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Gm4778-201ENSMUST00000098878 1098 ntBASIC15.31■□□□□ 0.04
Col18a1P39061 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Col18a1P39061 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col18a1P39061 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Mettl18-202ENSMUST00000111490 1419 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC15.3■□□□□ 0.04
Col18a1P39061 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Psmb3-201ENSMUST00000103147 766 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Gm14639-201ENSMUST00000120850 866 ntBASIC15.3■□□□□ 0.04
Col18a1P39061 Fthl17-ps2-201ENSMUST00000122268 528 ntBASIC15.3■□□□□ 0.04
Col18a1P39061 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Ube4bos3-201ENSMUST00000155845 756 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 4930505M18Rik-201ENSMUST00000175854 1288 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC15.3■□□□□ 0.04
Col18a1P39061 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC15.3■□□□□ 0.04
Col18a1P39061 Madcam1-202ENSMUST00000217748 944 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Olfr963-201ENSMUST00000073433 936 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Col18a1P39061 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Col18a1P39061 Enpp7-201ENSMUST00000092373 1370 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
Col18a1P39061 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC15.3■□□□□ 0.04
Col18a1P39061 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
Col18a1P39061 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
Col18a1P39061 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Gm43152-201ENSMUST00000202495 1638 ntBASIC15.3■□□□□ 0.04
Col18a1P39061 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col18a1P39061 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Col18a1P39061 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Col18a1P39061 Slc10a1-201ENSMUST00000095572 1674 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Zfand1-202ENSMUST00000108377 936 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Gm4917-201ENSMUST00000121452 650 ntBASIC15.29■□□□□ 0.04
Col18a1P39061 Gm12853-201ENSMUST00000134971 442 ntTSL 3 BASIC15.29■□□□□ 0.04
Col18a1P39061 Gm16283-201ENSMUST00000149935 522 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Atp5e-201ENSMUST00000016396 421 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Mir8091-201ENSMUST00000183602 139 ntBASIC15.29■□□□□ 0.04
Col18a1P39061 2310016G11Rik-201ENSMUST00000094460 992 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
Col18a1P39061 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms