Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm12501-201ENSMUST00000119163 529 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm12196-201ENSMUST00000120954 262 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm25881-201ENSMUST00000157783 103 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm18734-201ENSMUST00000172937 808 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm3332-201ENSMUST00000189337 928 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 AC153929.1-201ENSMUST00000219009 303 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm5705-201ENSMUST00000066241 711 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Vps28Q9D1C8 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.17□□□□□ -0.46
Vps28Q9D1C8 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm43289-201ENSMUST00000200537 1475 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm11509-201ENSMUST00000117358 325 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm15515-201ENSMUST00000117827 822 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 B9d1os-201ENSMUST00000137010 674 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm5732-201ENSMUST00000182596 1007 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm28686-201ENSMUST00000187404 609 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm43138-201ENSMUST00000199123 708 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm18753-201ENSMUST00000201000 566 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm9072-201ENSMUST00000218390 1514 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Vps28Q9D1C8 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Vps28Q9D1C8 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 68.3 ms