Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Gm13570-201ENSMUST00000140763 309 ntBASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Gm3096-201ENSMUST00000185770 364 ntBASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Gm9445-201ENSMUST00000207454 1285 ntBASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 AC166095.1-201ENSMUST00000223731 1241 ntBASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Crry-ps-201ENSMUST00000079090 1309 ntBASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Gm14028-201ENSMUST00000117434 479 ntBASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Gm25043-201ENSMUST00000158604 212 ntBASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Gstp-ps-201ENSMUST00000195526 631 ntBASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Gm45925-201ENSMUST00000218882 744 ntBASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 AC161537.1-201ENSMUST00000226199 1015 ntBASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sh3rf1Q69ZI1 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Sh3rf1Q69ZI1 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms