Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Sdc1P18828 Eif4g2-206ENSMUST00000161051 3548 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Sdc1P18828 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC9.67□□□□□ -0.86
Sdc1P18828 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC9.67□□□□□ -0.86
Sdc1P18828 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Mindy4-201ENSMUST00000053094 4270 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Kif4-201ENSMUST00000048962 4983 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Med19-201ENSMUST00000102645 2059 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Sla2-202ENSMUST00000109561 2634 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Kcnj9-201ENSMUST00000062387 3857 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Gm8805-201ENSMUST00000117848 313 ntBASIC9.67□□□□□ -0.86
Sdc1P18828 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC9.67□□□□□ -0.86
Sdc1P18828 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC9.67□□□□□ -0.86
Sdc1P18828 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC9.67□□□□□ -0.86
Sdc1P18828 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC9.67□□□□□ -0.86
Sdc1P18828 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC9.67□□□□□ -0.86
Sdc1P18828 Gm44958-201ENSMUST00000203734 736 ntBASIC9.67□□□□□ -0.86
Sdc1P18828 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 1700030K09Rik-202ENSMUST00000121902 2373 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.86
Sdc1P18828 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Gm21986-201ENSMUST00000113671 5560 ntTSL 2 BASIC9.67□□□□□ -0.86
Sdc1P18828 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.86
Sdc1P18828 Nucks1-201ENSMUST00000062264 5998 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Ciita-201ENSMUST00000023147 5254 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Sdc1P18828 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Sdc1P18828 CT009713.5-203ENSMUST00000224218 2079 ntBASIC9.67□□□□□ -0.86
Sdc1P18828 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
Sdc1P18828 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Zfp354b-201ENSMUST00000109124 2455 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Olfr1121-202ENSMUST00000213792 1996 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
Sdc1P18828 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
Sdc1P18828 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
Sdc1P18828 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
Sdc1P18828 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
Sdc1P18828 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
Sdc1P18828 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 AC154537.1-201ENSMUST00000226101 1304 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Gm13123-201ENSMUST00000122173 492 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC9.66□□□□□ -0.86
Sdc1P18828 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
Sdc1P18828 Gm5354-201ENSMUST00000182417 973 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Gm27331-201ENSMUST00000183705 60 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Gm27525-201ENSMUST00000184465 107 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
Sdc1P18828 Gm7730-201ENSMUST00000212486 454 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Gm20445-201ENSMUST00000061905 565 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC9.66□□□□□ -0.86
Sdc1P18828 CT868720.1-201ENSMUST00000223069 2544 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Csnk1g1-214ENSMUST00000206594 2482 ntAPPRIS P2 TSL 5 BASIC9.66□□□□□ -0.86
Sdc1P18828 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Spata33-207ENSMUST00000212760 4074 ntBASIC9.66□□□□□ -0.86
Sdc1P18828 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC9.66□□□□□ -0.86
Sdc1P18828 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
Sdc1P18828 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Pnma2-201ENSMUST00000089236 5518 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Dhx38-201ENSMUST00000042601 4463 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Esco1-201ENSMUST00000025142 4433 ntAPPRIS P2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Sdc1P18828 Prdm1-202ENSMUST00000105490 4025 ntAPPRIS P2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms