Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm24514-201ENSMUST00000174961 285 ntBASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Gm9540-201ENSMUST00000188230 478 ntBASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Gm26047-202ENSMUST00000198840 115 ntBASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Gm43916-201ENSMUST00000205062 967 ntBASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Ubfd1Q78JW9 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Ubfd1Q78JW9 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.55
Ubfd1Q78JW9 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm7224-201ENSMUST00000121359 2066 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm37660-201ENSMUST00000192754 1732 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 AC130671.2-201ENSMUST00000227224 1621 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm14193-201ENSMUST00000105067 153 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm12579-201ENSMUST00000118040 783 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Mup-ps26-201ENSMUST00000121751 202 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm9192-201ENSMUST00000183221 985 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm17831-201ENSMUST00000205579 900 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm6108-201ENSMUST00000208365 367 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm45770-201ENSMUST00000212105 616 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Gm7537-201ENSMUST00000221660 1414 ntBASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Ubfd1Q78JW9 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Gm8731-201ENSMUST00000118088 412 ntBASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Gm14441-201ENSMUST00000121960 540 ntBASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Gm22144-201ENSMUST00000157402 102 ntBASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Mir6546-201ENSMUST00000184460 62 ntBASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 AC154849.4-201ENSMUST00000224868 365 ntBASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Ubfd1Q78JW9 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms