Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sh3rf1Q69ZI1 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm37737-201ENSMUST00000195013 1638 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm38376-201ENSMUST00000195493 2253 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm11930-201ENSMUST00000117788 190 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm14130-201ENSMUST00000118417 987 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Il4-203ENSMUST00000140684 530 ntTSL 2 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Il4-204ENSMUST00000150568 605 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Mir3547-201ENSMUST00000175461 88 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 AA914427-201ENSMUST00000193194 1166 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm18212-201ENSMUST00000211678 889 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 AC167013.1-201ENSMUST00000228592 202 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Il4-201ENSMUST00000000889 590 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm7789-202ENSMUST00000211273 1400 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Gm43289-201ENSMUST00000200537 1475 ntBASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sh3rf1Q69ZI1 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Gm43868-201ENSMUST00000205187 2114 ntBASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Gm11439-201ENSMUST00000118598 409 ntBASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Gm11597-201ENSMUST00000121423 964 ntBASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Gm9333-201ENSMUST00000205452 1323 ntBASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sh3rf1Q69ZI1 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sh3rf1Q69ZI1 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 1540.9 ms