Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC14.17□□□□□ -0.14
Rfx1P48377 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Gm37580-201ENSMUST00000192408 2800 ntBASIC14.17□□□□□ -0.14
Rfx1P48377 Gm43963-201ENSMUST00000203466 2488 ntBASIC14.17□□□□□ -0.14
Rfx1P48377 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.17□□□□□ -0.14
Rfx1P48377 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Rfx1P48377 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rfx1P48377 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC14.16□□□□□ -0.14
Rfx1P48377 Gm2639-201ENSMUST00000156881 1297 ntBASIC14.16□□□□□ -0.14
Rfx1P48377 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC14.16□□□□□ -0.14
Rfx1P48377 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Gm18711-201ENSMUST00000199341 750 ntBASIC14.16□□□□□ -0.14
Rfx1P48377 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Rfx1P48377 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC14.16□□□□□ -0.14
Rfx1P48377 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Rfx1P48377 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC14.16□□□□□ -0.14
Rfx1P48377 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rfx1P48377 Gm15163-201ENSMUST00000120749 1302 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Gm37737-201ENSMUST00000195013 1638 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC14.15□□□□□ -0.14
Rfx1P48377 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Rfx1P48377 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Rfx1P48377 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC14.15□□□□□ -0.14
Rfx1P48377 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Rfx1P48377 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Rfx1P48377 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Rfx1P48377 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Gm12390-201ENSMUST00000117897 397 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Gm11658-201ENSMUST00000120913 1008 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.15□□□□□ -0.14
Rfx1P48377 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC14.15□□□□□ -0.14
Rfx1P48377 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Gm2467-201ENSMUST00000182266 1010 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Gm6981-201ENSMUST00000182467 1008 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Gm28882-201ENSMUST00000185504 314 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC14.15□□□□□ -0.14
Rfx1P48377 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC14.15□□□□□ -0.14
Rfx1P48377 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Rfx1P48377 Snora73a-201ENSMUST00000082453 205 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Rfx1P48377 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Rfx1P48377 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Rfx1P48377 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Rfx1P48377 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Gm18626-201ENSMUST00000221512 1409 ntBASIC14.15□□□□□ -0.14
Rfx1P48377 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rfx1P48377 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms