Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 AC093022.1-201ENSMUST00000226949 1072 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 AC122197.2-201ENSMUST00000219196 1635 ntBASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim3Q9R1R2 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 AC126444.1-201ENSMUST00000225938 1768 ntBASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Gm5869-201ENSMUST00000200248 1257 ntBASIC11.23□□□□□ -0.61
Trim3Q9R1R2 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Gm18056-201ENSMUST00000207670 568 ntBASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Gm18061-201ENSMUST00000208350 562 ntBASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Gm18063-201ENSMUST00000208529 568 ntBASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Gm18052-201ENSMUST00000208750 559 ntBASIC11.23□□□□□ -0.61
Trim3Q9R1R2 AC153974.2-201ENSMUST00000218577 1025 ntBASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Rassf8-202ENSMUST00000058538 1131 ntBASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim3Q9R1R2 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm2128-201ENSMUST00000108009 2560 ntBASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm12015-201ENSMUST00000117065 843 ntBASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm13665-201ENSMUST00000120830 528 ntBASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms