Protein–RNA interactions for Protein: Q99LI7

Cstf3, Cleavage stimulation factor subunit 3, mousemouse

Known RBP Predictions only

Length 717 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf3Q99LI7 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cstf3Q99LI7 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cstf3Q99LI7 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cstf3Q99LI7 Gm37660-201ENSMUST00000192754 1732 ntBASIC11.52□□□□□ -0.56
Cstf3Q99LI7 Gm37014-201ENSMUST00000194723 2253 ntBASIC11.52□□□□□ -0.56
Cstf3Q99LI7 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
Cstf3Q99LI7 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cstf3Q99LI7 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Gm14644-201ENSMUST00000116671 647 ntBASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Gm12015-201ENSMUST00000117065 843 ntBASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cstf3Q99LI7 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm9796-201ENSMUST00000062249 2250 ntBASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm12241-201ENSMUST00000118330 726 ntBASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm5419-201ENSMUST00000119301 527 ntBASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm12164-201ENSMUST00000121695 551 ntBASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm27501-201ENSMUST00000183599 107 ntBASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm3096-201ENSMUST00000185770 364 ntBASIC11.51□□□□□ -0.57
Cstf3Q99LI7 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Cstf3Q99LI7 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cstf3Q99LI7 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms