Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clp1Q99LI9 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Clp1Q99LI9 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clp1Q99LI9 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Clp1Q99LI9 AC123834.1-201ENSMUST00000225346 2043 ntBASIC12.59□□□□□ -0.39
Clp1Q99LI9 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Clp1Q99LI9 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Clp1Q99LI9 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Clp1Q99LI9 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 4930589L23Rik-201ENSMUST00000091023 1364 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm43364-201ENSMUST00000196046 3274 ntBASIC12.58□□□□□ -0.4
Clp1Q99LI9 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm13549-201ENSMUST00000118339 796 ntBASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm12030-201ENSMUST00000121917 223 ntBASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm23757-201ENSMUST00000158353 100 ntBASIC12.58□□□□□ -0.4
Clp1Q99LI9 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm9135-201ENSMUST00000182963 990 ntBASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm9192-201ENSMUST00000183221 985 ntBASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm28722-201ENSMUST00000187630 1036 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.58□□□□□ -0.4
Clp1Q99LI9 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Clp1Q99LI9 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gm9796-201ENSMUST00000062249 2250 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gm10169-201ENSMUST00000121822 348 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gm45758-201ENSMUST00000212448 1006 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 AC168279.1-201ENSMUST00000214611 382 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 CT009546.1-201ENSMUST00000222573 1120 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Gm15784-201ENSMUST00000120260 1462 ntBASIC12.57□□□□□ -0.4
Clp1Q99LI9 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Clp1Q99LI9 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms