Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gm13722-201ENSMUST00000117964 3066 ntBASIC14.05□□□□□ -0.16
Trim56Q80VI1 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gm43051-201ENSMUST00000201096 2678 ntBASIC14.05□□□□□ -0.16
Trim56Q80VI1 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Gm15595-201ENSMUST00000120840 961 ntBASIC14.04□□□□□ -0.16
Trim56Q80VI1 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Gm20426-201ENSMUST00000173657 440 ntBASIC14.04□□□□□ -0.16
Trim56Q80VI1 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Gm6114-201ENSMUST00000182472 968 ntBASIC14.04□□□□□ -0.16
Trim56Q80VI1 Gm35960-201ENSMUST00000202712 767 ntBASIC14.04□□□□□ -0.16
Trim56Q80VI1 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Gm9333-201ENSMUST00000205452 1323 ntBASIC14.04□□□□□ -0.16
Trim56Q80VI1 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Gm8146-201ENSMUST00000192106 1847 ntBASIC14.04□□□□□ -0.16
Trim56Q80VI1 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Trim56Q80VI1 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm13045-201ENSMUST00000119019 712 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm15207-201ENSMUST00000119259 442 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm11941-201ENSMUST00000119904 610 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Mir3102-201ENSMUST00000175555 104 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm5732-201ENSMUST00000182596 1007 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm19353-201ENSMUST00000184561 445 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm5714-201ENSMUST00000197343 566 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm6450-201ENSMUST00000200896 574 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Gm43172-201ENSMUST00000202139 2137 ntBASIC14.03□□□□□ -0.16
Trim56Q80VI1 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trim56Q80VI1 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim56Q80VI1 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC14.02□□□□□ -0.16
Trim56Q80VI1 Gm18986-201ENSMUST00000216029 1986 ntBASIC14.02□□□□□ -0.16
Trim56Q80VI1 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim56Q80VI1 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim56Q80VI1 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trim56Q80VI1 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm12579-201ENSMUST00000118040 783 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm23085-201ENSMUST00000157849 293 ntBASIC14.02□□□□□ -0.17
Trim56Q80VI1 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC14.02□□□□□ -0.17
Trim56Q80VI1 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms