Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm5884-201ENSMUST00000036712 1479 ntBASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sh3rf1Q69ZI1 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Gm37660-201ENSMUST00000192754 1732 ntBASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Gm13492-201ENSMUST00000119772 665 ntBASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Gm15276-201ENSMUST00000145953 498 ntBASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Rmrp-201ENSMUST00000157463 271 ntBASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Gm2260-201ENSMUST00000184965 657 ntBASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 AL732506.1-201ENSMUST00000226420 281 ntBASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Sh3rf1Q69ZI1 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm7537-201ENSMUST00000221660 1414 ntBASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm37827-201ENSMUST00000194486 1542 ntBASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm5859-201ENSMUST00000165401 2324 ntBASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm6211-201ENSMUST00000147973 4275 ntBASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm45186-201ENSMUST00000206874 478 ntBASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 AC126253.1-202ENSMUST00000226732 835 ntBASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Gm3287-205ENSMUST00000228893 1332 ntBASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms