Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Gm16372-201ENSMUST00000073088 450 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Gm3695-201ENSMUST00000087222 1009 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Ankrd1-201ENSMUST00000025718 1765 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC9.67□□□□□ -0.86
Cdx1P18111 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
Cdx1P18111 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Scnn1b-201ENSMUST00000033161 2478 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Mpp1-202ENSMUST00000114091 1558 ntTSL 2 BASIC9.67□□□□□ -0.86
Cdx1P18111 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Calr-201ENSMUST00000003912 2184 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC9.67□□□□□ -0.86
Cdx1P18111 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC9.67□□□□□ -0.86
Cdx1P18111 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC9.67□□□□□ -0.86
Cdx1P18111 Gm42627-201ENSMUST00000197347 224 ntBASIC9.67□□□□□ -0.86
Cdx1P18111 Gm3961-201ENSMUST00000204425 994 ntBASIC9.67□□□□□ -0.86
Cdx1P18111 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC9.67□□□□□ -0.86
Cdx1P18111 AC173210.1-201ENSMUST00000222341 1131 ntBASIC9.67□□□□□ -0.86
Cdx1P18111 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Cdx1P18111 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
Cdx1P18111 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Olfr315-202ENSMUST00000203256 2458 ntAPPRIS P1 TSL 3 BASIC9.67□□□□□ -0.86
Cdx1P18111 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Cdx1P18111 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC9.67□□□□□ -0.86
Cdx1P18111 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
Cdx1P18111 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
Cdx1P18111 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC9.67□□□□□ -0.86
Cdx1P18111 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC9.66□□□□□ -0.86
Cdx1P18111 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC9.66□□□□□ -0.86
Cdx1P18111 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
Cdx1P18111 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
Cdx1P18111 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
Cdx1P18111 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC9.66□□□□□ -0.86
Cdx1P18111 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC9.66□□□□□ -0.86
Cdx1P18111 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC9.66□□□□□ -0.86
Cdx1P18111 Gm26927-201ENSMUST00000182385 965 ntBASIC9.66□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms